| TF name | Position | PWM scan score |
| ArcA | 330-390 | 29.511 |
| CysB | 98-139 | 21.278 |
| AgaR | 90-113 | 18.766 |
| GcvA | 354-382 | 18.585 |
| OxyR | 74-118 | 17.231 |
| FNR | 127-148 | 17.047 |
| H-NS | 340-354 | 15.861 |
| CRP | 209-230 | 15.107 |
| UlaR | 83-102 | 14.777 |
| Fur | 341-355 | 14.738 |
| OmpR | 349-368 | 14.676 |
| CytR | 61-100 | 14.382 |
| Fis | 341-361 | 14.345 |
| Mlc | 217-239 | 14.245 |
| IdnR | 224-239 | 13.961 |
| NagC | 97-119 | 13.797 |
| FhlA | 323-362 | 13.443 |
| RcsB | 216-229 | 13.232 |
| Rob | 50-70 | 13.050 |
| PhoB | 87-106 | 13.038 |
| PhoP | 345-361 | 13.038 |
| IHF | 87-99 | 12.914 |
| DeoR | 336-351 | 12.899 |
| SoxS | 335-352 | 12.554 |
| Lrp | 130-141 | 12.537 |
| MetR | 206-229 | 12.524 |
| MelR | 347-364 | 11.986 |
| DnaA | 159-167 | 11.932 |
| GalS | 336-351 | 11.670 |
| GalR | 336-351 | 11.670 |
| GadE | 127-146 | 11.549 |
| DcuR | 313-367 | 11.383 |
| XylR | 363-380 | 10.947 |
| Nac | 254-268 | 10.833 |
| ArgP | 135-147 | 10.743 |
| TyrR | 215-236 | 10.739 |
| CpxR | 303-317 | 10.514 |
| ArgR | 348-363 | 10.295 |
| MetJ | 176-183 | 10.148 |
| NarL | 6-12 | 9.994 |
| TorR | 156-165 | 9.956 |
| GlpR | 44-63 | 9.912 |
| PspF | 91-107 | 9.792 |
| Ada | 224-251 | 9.696 |
| NarP | 103-109 | 9.455 |
| AraC | 212-229 | 9.447 |
| ModE | 80-106 | 9.069 |
| MarA | 300-320 | 8.954 |
| LexA | 172-191 | 8.566 |
| PurR | 213-228 | 8.391 |
| GntR | 152-171 | 7.404 |
| NorR | 214-230 | 7.257 |
| UxuR | 208-225 | 7.154 |
| MalT | 212-221 | 6.710 |
| FruR | 128-145 | 5.670 |
| LacI | 176-196 | 5.216 |