| TF name | Position | PWM scan score |
| ArcA | 334-394 | 30.635 |
| CytR | 334-373 | 22.458 |
| OxyR | 338-382 | 17.558 |
| AraC | 263-280 | 15.558 |
| CysB | 328-369 | 15.369 |
| CpxR | 316-330 | 14.710 |
| H-NS | 88-102 | 14.671 |
| FNR | 355-376 | 14.555 |
| MetR | 310-333 | 14.246 |
| UlaR | 286-305 | 14.085 |
| CRP | 358-379 | 13.804 |
| IHF | 361-373 | 13.161 |
| RcsB | 92-105 | 13.072 |
| PhoB | 327-346 | 12.906 |
| Ada | 334-361 | 12.815 |
| PhoP | 326-342 | 12.794 |
| Fis | 361-381 | 12.731 |
| GcvA | 354-382 | 12.423 |
| OmpR | 309-328 | 12.311 |
| DeoR | 373-388 | 12.284 |
| Lrp | 94-105 | 12.230 |
| NagC | 299-321 | 12.168 |
| AgaR | 293-316 | 12.131 |
| Rob | 364-384 | 11.998 |
| SoxS | 242-259 | 11.876 |
| XylR | 252-269 | 11.755 |
| GadE | 283-302 | 11.576 |
| ArgR | 313-328 | 11.453 |
| ArgP | 360-372 | 11.371 |
| IdnR | 81-96 | 11.265 |
| CaiF | 333-377 | 11.262 |
| GlpR | 371-390 | 11.090 |
| Nac | 255-269 | 10.831 |
| TyrR | 278-299 | 10.737 |
| Mlc | 357-379 | 10.662 |
| NorR | 163-179 | 10.648 |
| UxuR | 40-57 | 10.394 |
| TorR | 262-271 | 9.826 |
| DcuR | 292-346 | 9.580 |
| ModE | 349-375 | 9.412 |
| MelR | 173-190 | 9.139 |
| NarL | 264-270 | 9.129 |
| DnaA | 261-269 | 9.103 |
| Fur | 89-103 | 8.584 |
| GntR | 254-273 | 8.118 |
| MarA | 135-155 | 8.039 |
| FruR | 330-347 | 7.890 |
| NtrC | 50-66 | 6.803 |
| MetJ | 32-39 | 6.776 |
| PspF | 346-362 | 6.401 |
| LexA | 231-250 | 5.495 |