| TF name | Position | PWM scan score |
| ArcA | 289-349 | 22.813 |
| CysB | 287-328 | 17.714 |
| OmpR | 307-326 | 17.633 |
| CytR | 290-329 | 17.060 |
| Fis | 370-390 | 15.952 |
| FNR | 311-332 | 15.872 |
| GadE | 40-59 | 15.266 |
| PhoP | 371-387 | 15.226 |
| Nac | 111-125 | 14.872 |
| DcuR | 15-69 | 14.190 |
| GlpR | 127-146 | 14.161 |
| MetR | 341-364 | 13.998 |
| CRP | 41-62 | 13.958 |
| CpxR | 307-321 | 13.682 |
| FruR | 279-296 | 13.618 |
| IHF | 143-155 | 13.322 |
| NorR | 105-121 | 13.156 |
| TyrR | 100-121 | 12.854 |
| H-NS | 376-390 | 12.729 |
| OxyR | 351-395 | 12.656 |
| NagC | 314-336 | 12.513 |
| TorR | 212-221 | 12.289 |
| DeoR | 5-20 | 12.284 |
| MarA | 128-148 | 12.274 |
| Fur | 137-151 | 11.955 |
| MetJ | 317-324 | 11.820 |
| Rob | 80-100 | 11.553 |
| AgaR | 300-323 | 11.216 |
| GcvA | 209-237 | 10.990 |
| ArgP | 380-392 | 10.920 |
| XylR | 304-321 | 10.847 |
| UxuR | 301-318 | 10.723 |
| UlaR | 304-323 | 10.657 |
| SoxS | 130-147 | 10.501 |
| MelR | 335-352 | 10.170 |
| PhoB | 378-397 | 9.952 |
| AraC | 331-348 | 9.646 |
| Lrp | 140-151 | 9.443 |
| PspF | 82-98 | 9.416 |
| NarL | 383-389 | 9.240 |
| ArgR | 319-334 | 9.153 |
| ModE | 137-163 | 8.900 |
| GntR | 365-384 | 8.887 |
| RcsB | 141-154 | 8.696 |
| FadR | 54-70 | 8.531 |
| FhlA | 254-293 | 8.491 |
| DnaA | 372-380 | 8.323 |
| Mlc | 3-25 | 8.100 |
| RhaS | 22-38 | 7.960 |
| NarP | 41-47 | 7.740 |
| Ada | 266-293 | 7.634 |
| CaiF | 112-156 | 6.532 |
| PurR | 90-105 | 6.407 |
| LacI | 287-307 | 5.851 |