| TF name | Position | PWM scan score |
| ArcA | 313-373 | 37.063 |
| CytR | 321-360 | 18.978 |
| CysB | 322-363 | 18.651 |
| OmpR | 142-161 | 17.633 |
| AgaR | 363-386 | 17.442 |
| Fis | 205-225 | 15.952 |
| FNR | 146-167 | 15.872 |
| PhoP | 206-222 | 15.226 |
| DeoR | 276-291 | 14.393 |
| MetR | 176-199 | 13.998 |
| Nac | 109-123 | 13.962 |
| GcvA | 265-293 | 13.700 |
| CpxR | 142-156 | 13.682 |
| FruR | 114-131 | 13.618 |
| OxyR | 354-398 | 13.162 |
| H-NS | 270-284 | 13.128 |
| DcuR | 254-308 | 13.119 |
| CRP | 363-384 | 12.861 |
| NorR | 25-41 | 12.817 |
| NagC | 329-351 | 12.566 |
| GadE | 149-168 | 12.459 |
| TorR | 47-56 | 12.289 |
| IHF | 355-367 | 11.976 |
| MetJ | 152-159 | 11.820 |
| TyrR | 372-393 | 11.784 |
| ArgR | 351-366 | 11.504 |
| MarA | 224-244 | 11.406 |
| XylR | 378-395 | 11.332 |
| MelR | 295-312 | 11.288 |
| AraC | 340-357 | 11.022 |
| ArgP | 215-227 | 10.920 |
| UxuR | 136-153 | 10.723 |
| Rob | 23-43 | 10.688 |
| UlaR | 139-158 | 10.657 |
| RcsB | 374-387 | 10.498 |
| SoxS | 112-129 | 10.476 |
| PhoB | 307-326 | 10.463 |
| NarL | 357-363 | 10.241 |
| IdnR | 366-381 | 10.053 |
| Fur | 355-369 | 9.737 |
| Lrp | 365-376 | 9.640 |
| PspF | 352-368 | 9.453 |
| GlpR | 22-41 | 9.333 |
| GntR | 200-219 | 8.887 |
| Mlc | 309-331 | 8.561 |
| FhlA | 89-128 | 8.491 |
| CaiF | 330-374 | 8.468 |
| DnaA | 207-215 | 8.323 |
| Ada | 313-340 | 8.064 |
| ModE | 359-385 | 7.788 |
| LacI | 270-290 | 6.002 |
| NtrC | 304-320 | 5.923 |
| NarP | 374-380 | 5.632 |
| FadR | 168-184 | 5.529 |
| GalR | 235-250 | 5.415 |
| GalS | 235-250 | 5.415 |
| LexA | 301-320 | 5.018 |