| TF name | Position | PWM scan score |
| AgaR | 363-386 | 15.591 |
| ArcA | 73-133 | 15.261 |
| IHF | 320-332 | 14.041 |
| H-NS | 135-149 | 13.329 |
| OmpR | 163-182 | 11.637 |
| CytR | 66-105 | 11.567 |
| MelR | 113-130 | 11.335 |
| TyrR | 183-204 | 11.248 |
| GadE | 313-332 | 11.038 |
| LexA | 49-68 | 11.013 |
| UlaR | 113-132 | 10.993 |
| Fis | 48-68 | 10.873 |
| MetR | 355-378 | 10.623 |
| CRP | 82-103 | 10.215 |
| MarA | 266-286 | 10.174 |
| NorR | 60-76 | 10.057 |
| SoxS | 267-284 | 9.978 |
| Fur | 79-93 | 9.855 |
| Rob | 53-73 | 9.848 |
| UxuR | 266-283 | 9.672 |
| DcuR | 53-107 | 9.328 |
| PhoB | 55-74 | 9.256 |
| Lrp | 28-39 | 9.145 |
| ModE | 176-202 | 9.139 |
| AraC | 59-76 | 9.131 |
| Nac | 72-86 | 9.079 |
| NtrC | 131-147 | 8.993 |
| FNR | 359-380 | 8.805 |
| RhaS | 160-176 | 8.739 |
| RcsB | 20-33 | 8.613 |
| PhoP | 68-84 | 8.589 |
| OxyR | 353-397 | 8.542 |
| NarL | 391-397 | 8.439 |
| IdnR | 40-55 | 8.253 |
| PspF | 204-220 | 7.952 |
| FadR | 356-372 | 7.883 |
| CysB | 71-112 | 7.754 |
| GlpR | 136-155 | 7.582 |
| NagC | 375-397 | 7.498 |
| ArgP | 319-331 | 7.495 |
| DeoR | 346-361 | 7.495 |
| XylR | 359-376 | 7.312 |
| GntR | 163-182 | 7.235 |
| ArgR | 350-365 | 7.161 |
| TorR | 66-75 | 7.027 |
| CpxR | 94-108 | 6.952 |
| MalT | 7-16 | 6.672 |
| MetJ | 148-155 | 6.485 |
| FruR | 262-279 | 6.294 |
| DnaA | 24-32 | 5.891 |
| NarP | 321-327 | 5.293 |
| Mlc | 266-288 | 5.264 |