| TF name | Position | PWM scan score |
| ArcA | 336-396 | 22.709 |
| MarA | 346-366 | 19.102 |
| CRP | 241-262 | 17.149 |
| GcvA | 358-386 | 16.247 |
| AgaR | 198-221 | 15.591 |
| PhoB | 344-363 | 15.342 |
| OmpR | 344-363 | 15.312 |
| FNR | 235-256 | 15.056 |
| CytR | 280-319 | 14.622 |
| NorR | 243-259 | 14.422 |
| IHF | 244-256 | 14.236 |
| CysB | 245-286 | 13.751 |
| GntR | 278-297 | 13.612 |
| GadE | 297-316 | 13.278 |
| Fis | 245-265 | 12.646 |
| NagC | 369-391 | 12.364 |
| MetR | 229-252 | 12.105 |
| H-NS | 346-360 | 12.032 |
| ArgR | 237-252 | 12.006 |
| Fur | 286-300 | 11.533 |
| TyrR | 18-39 | 11.248 |
| OxyR | 345-389 | 10.791 |
| SoxS | 374-391 | 10.645 |
| DeoR | 237-252 | 9.717 |
| UxuR | 101-118 | 9.672 |
| MelR | 358-375 | 9.644 |
| NarP | 231-237 | 9.455 |
| Nac | 299-313 | 9.337 |
| Lrp | 342-353 | 9.303 |
| PhoP | 246-262 | 9.150 |
| ModE | 11-37 | 9.139 |
| UlaR | 151-170 | 8.788 |
| ArgP | 312-324 | 8.674 |
| PspF | 241-257 | 8.560 |
| GlpR | 249-268 | 8.559 |
| RcsB | 278-291 | 8.445 |
| NarL | 226-232 | 8.439 |
| Rob | 251-271 | 8.413 |
| FadR | 191-207 | 7.883 |
| CpxR | 305-319 | 7.597 |
| IdnR | 338-353 | 7.340 |
| XylR | 194-211 | 7.312 |
| NtrC | 197-213 | 7.253 |
| CueR | 263-281 | 7.242 |
| FruR | 275-292 | 7.054 |
| GalR | 302-317 | 7.033 |
| GalS | 302-317 | 7.033 |
| DcuR | 318-372 | 7.032 |
| LexA | 255-274 | 7.002 |
| Mlc | 300-322 | 6.371 |
| TorR | 252-261 | 6.217 |
| AraC | 194-211 | 6.169 |
| MetJ | 363-370 | 6.057 |
| MalT | 210-219 | 5.979 |
| LacI | 346-366 | 5.552 |