| TF name | Position | PWM scan score |
| CysB | 35-76 | 21.785 |
| ArcA | 338-398 | 19.616 |
| GadE | 364-383 | 18.846 |
| AraC | 53-70 | 16.182 |
| OxyR | 350-394 | 16.137 |
| FNR | 364-385 | 15.736 |
| RcsB | 200-213 | 15.723 |
| NagC | 190-212 | 15.721 |
| CytR | 22-61 | 15.510 |
| TorR | 52-61 | 15.284 |
| IHF | 53-65 | 14.735 |
| Nac | 195-209 | 14.718 |
| XylR | 19-36 | 14.091 |
| CRP | 290-311 | 13.669 |
| FhlA | 357-396 | 13.532 |
| Lrp | 202-213 | 12.876 |
| H-NS | 196-210 | 12.730 |
| NorR | 210-226 | 12.434 |
| MetJ | 263-270 | 12.367 |
| ModE | 236-262 | 12.300 |
| Fis | 236-256 | 11.784 |
| AgaR | 118-141 | 11.563 |
| UlaR | 253-272 | 11.387 |
| CpxR | 371-385 | 11.179 |
| Fur | 199-213 | 10.559 |
| PhoP | 382-398 | 10.421 |
| TyrR | 359-380 | 10.217 |
| ArgR | 113-128 | 10.193 |
| GntR | 326-345 | 9.948 |
| Ada | 118-145 | 9.783 |
| DnaA | 198-206 | 9.731 |
| PspF | 22-38 | 9.547 |
| Mlc | 366-388 | 9.339 |
| MetR | 9-32 | 8.958 |
| ArgP | 204-216 | 8.855 |
| MarA | 284-304 | 8.791 |
| NarL | 201-207 | 8.728 |
| GcvA | 368-396 | 8.594 |
| OmpR | 191-210 | 8.578 |
| GlpR | 361-380 | 8.465 |
| UxuR | 125-142 | 8.235 |
| NtrC | 89-105 | 8.209 |
| NarP | 128-134 | 7.762 |
| SoxS | 194-211 | 7.697 |
| Rob | 190-210 | 7.653 |
| FadR | 371-387 | 7.367 |
| PhoB | 110-129 | 7.096 |
| DeoR | 23-38 | 6.901 |
| DcuR | 343-397 | 6.696 |
| MelR | 312-329 | 6.456 |
| FruR | 129-146 | 5.991 |
| CueR | 307-325 | 5.429 |
| MalT | 47-56 | 5.283 |