| TF name | Position | PWM scan score |
| ArcA | 97-157 | 25.976 |
| CysB | 352-393 | 20.649 |
| Fur | 376-390 | 19.336 |
| GcvA | 106-134 | 18.241 |
| OmpR | 114-133 | 17.294 |
| MetR | 261-284 | 16.331 |
| IHF | 109-121 | 16.172 |
| CytR | 254-293 | 16.049 |
| PhoP | 118-134 | 15.496 |
| OxyR | 199-243 | 15.175 |
| FNR | 262-283 | 13.523 |
| NagC | 258-280 | 13.410 |
| ArgR | 265-280 | 13.282 |
| CRP | 365-386 | 13.183 |
| TorR | 342-351 | 12.920 |
| CpxR | 242-256 | 12.093 |
| Rob | 345-365 | 11.896 |
| TyrR | 140-161 | 11.785 |
| XylR | 372-389 | 11.735 |
| Lrp | 379-390 | 11.484 |
| PspF | 97-113 | 11.444 |
| MelR | 268-285 | 11.302 |
| PhoB | 331-350 | 11.287 |
| UlaR | 268-287 | 11.201 |
| RcsB | 377-390 | 11.071 |
| MarA | 116-136 | 11.061 |
| GadE | 61-80 | 11.039 |
| DcuR | 43-97 | 11.000 |
| DeoR | 92-107 | 10.918 |
| ModE | 60-86 | 10.615 |
| Fis | 257-277 | 10.528 |
| H-NS | 176-190 | 10.358 |
| NorR | 274-290 | 10.309 |
| GntR | 315-334 | 10.122 |
| Mlc | 277-299 | 10.075 |
| AgaR | 249-272 | 9.972 |
| Nac | 322-336 | 9.612 |
| NarL | 381-387 | 9.444 |
| Ada | 360-387 | 8.910 |
| ArgP | 371-383 | 8.711 |
| GlpR | 375-394 | 8.615 |
| SoxS | 173-190 | 8.564 |
| IdnR | 323-338 | 8.411 |
| UxuR | 246-263 | 8.396 |
| AraC | 343-360 | 7.934 |
| NarP | 13-19 | 7.740 |
| GalS | 105-120 | 7.579 |
| GalR | 105-120 | 7.579 |
| FadR | 95-111 | 7.417 |
| FruR | 327-344 | 7.061 |
| MalT | 10-19 | 6.922 |
| CaiF | 166-210 | 6.606 |
| FhlA | 55-94 | 6.404 |
| DnaA | 119-127 | 6.355 |
| NtrC | 266-282 | 6.306 |
| MetJ | 305-312 | 6.292 |
| TrpR | 209-226 | 5.067 |