| TF name | Position | PWM scan score |
| ArcA | 253-313 | 25.145 |
| OxyR | 71-115 | 17.291 |
| PhoB | 17-36 | 17.052 |
| DcuR | 70-124 | 16.711 |
| GlpR | 359-378 | 16.667 |
| AgaR | 77-100 | 16.201 |
| XylR | 272-289 | 14.983 |
| OmpR | 359-378 | 14.976 |
| MelR | 373-390 | 14.321 |
| FNR | 87-108 | 13.811 |
| NagC | 92-114 | 13.703 |
| LexA | 59-78 | 13.604 |
| IHF | 247-259 | 13.574 |
| TyrR | 286-307 | 13.421 |
| PurR | 298-313 | 13.117 |
| Mlc | 91-113 | 13.036 |
| GadE | 95-114 | 13.000 |
| UlaR | 242-261 | 12.644 |
| H-NS | 378-392 | 12.406 |
| CytR | 78-117 | 11.864 |
| CRP | 57-78 | 11.711 |
| Rob | 3-23 | 11.699 |
| CpxR | 266-280 | 11.413 |
| FhlA | 216-255 | 11.253 |
| GcvA | 90-118 | 10.918 |
| ModE | 13-39 | 10.737 |
| RcsB | 277-290 | 10.717 |
| GntR | 55-74 | 10.505 |
| Lrp | 173-184 | 10.357 |
| Fis | 97-117 | 10.204 |
| LacI | 108-128 | 10.172 |
| ArgP | 25-37 | 9.941 |
| SoxS | 363-380 | 9.679 |
| CysB | 101-142 | 9.443 |
| DeoR | 89-104 | 9.361 |
| NorR | 246-262 | 9.315 |
| MarA | 92-112 | 9.218 |
| MetJ | 130-137 | 9.177 |
| Ada | 76-103 | 9.135 |
| IdnR | 352-367 | 8.599 |
| Nac | 275-289 | 8.579 |
| NarL | 386-392 | 8.545 |
| DnaA | 95-103 | 8.492 |
| GalS | 59-74 | 8.480 |
| GalR | 59-74 | 8.480 |
| PspF | 291-307 | 8.479 |
| CueR | 145-163 | 8.410 |
| PhoP | 275-291 | 8.344 |
| MetR | 368-391 | 7.749 |
| AraC | 130-147 | 7.653 |
| ArgR | 353-368 | 7.555 |
| UxuR | 296-313 | 6.912 |
| Fur | 108-122 | 6.896 |
| CaiF | 216-260 | 6.835 |
| MalT | 257-266 | 6.640 |
| TorR | 244-253 | 6.505 |
| NtrC | 290-306 | 6.463 |
| FadR | 136-152 | 6.256 |
| RhaS | 118-134 | 5.956 |
| NarP | 268-274 | 5.146 |