| TF name | Position | PWM scan score |
| CRP | 142-163 | 16.042 |
| UxuR | 206-223 | 15.450 |
| GalR | 320-335 | 13.599 |
| GalS | 320-335 | 13.599 |
| Rob | 58-78 | 13.008 |
| H-NS | 2-16 | 12.082 |
| ArcA | 124-184 | 11.779 |
| GlpR | 111-130 | 11.087 |
| MelR | 355-372 | 10.863 |
| IHF | 4-16 | 10.636 |
| IdnR | 161-176 | 10.563 |
| FNR | 145-166 | 10.522 |
| UlaR | 99-118 | 10.201 |
| MetJ | 256-263 | 9.980 |
| LacI | 155-175 | 9.789 |
| SoxS | 222-239 | 9.788 |
| PspF | 206-222 | 9.520 |
| NarL | 384-390 | 9.129 |
| CysB | 110-151 | 8.893 |
| DeoR | 102-117 | 8.690 |
| LexA | 118-137 | 8.426 |
| PhoB | 354-373 | 8.397 |
| FruR | 320-337 | 8.381 |
| AraC | 268-285 | 8.368 |
| Lrp | 175-186 | 8.333 |
| Fis | 209-229 | 8.317 |
| MalT | 300-309 | 7.968 |
| PurR | 320-335 | 7.879 |
| RhaS | 229-245 | 7.298 |
| MetR | 241-264 | 7.005 |
| TyrR | 111-132 | 6.762 |
| Nac | 147-161 | 6.741 |
| CueR | 230-248 | 6.631 |
| Ada | 142-169 | 6.496 |
| NarP | 368-374 | 6.454 |
| MarA | 112-132 | 6.398 |
| ArgR | 205-220 | 6.023 |
| RcsB | 268-281 | 5.934 |
| DnaA | 366-374 | 5.874 |
| CpxR | 167-181 | 5.829 |
| ArgP | 101-113 | 5.775 |
| FadR | 91-107 | 5.748 |
| OmpR | 4-23 | 5.739 |
| TorR | 171-180 | 5.600 |