| TF name | Position | PWM scan score |
| GcvA | 78-106 | 19.587 |
| OmpR | 81-100 | 18.730 |
| NagC | 259-281 | 17.203 |
| Fis | 262-282 | 15.225 |
| ArcA | 246-306 | 14.877 |
| AgaR | 271-294 | 14.735 |
| CRP | 271-292 | 13.696 |
| Nac | 261-275 | 12.696 |
| Fur | 263-277 | 11.819 |
| XylR | 275-292 | 11.755 |
| PhoP | 75-91 | 11.439 |
| PhoB | 259-278 | 11.154 |
| ArgP | 80-92 | 11.056 |
| FNR | 263-284 | 11.021 |
| H-NS | 267-281 | 10.930 |
| IHF | 263-275 | 10.755 |
| Rob | 79-99 | 10.582 |
| SoxS | 256-273 | 10.417 |
| GadE | 261-280 | 10.007 |
| IdnR | 191-206 | 9.586 |
| Lrp | 79-90 | 9.252 |
| ArgR | 265-280 | 8.539 |
| TyrR | 252-273 | 8.443 |
| CpxR | 217-231 | 8.234 |
| MetR | 71-94 | 8.060 |
| GntR | 91-110 | 8.040 |
| AraC | 76-93 | 7.879 |
| FruR | 104-121 | 7.715 |
| CytR | 237-276 | 7.626 |
| NarL | 275-281 | 7.544 |
| OxyR | 178-222 | 7.542 |
| PurR | 302-317 | 7.448 |
| NtrC | 102-118 | 7.446 |
| PspF | 81-97 | 7.388 |
| DeoR | 265-280 | 7.120 |
| GalS | 362-377 | 7.106 |
| GalR | 362-377 | 7.106 |
| RcsB | 82-95 | 6.723 |
| CysB | 242-283 | 6.701 |
| FadR | 267-283 | 6.688 |
| UlaR | 264-283 | 6.429 |
| DnaA | 227-235 | 6.369 |
| TorR | 84-93 | 6.203 |
| RhaS | 88-104 | 5.889 |
| MetJ | 205-212 | 5.848 |
| MelR | 269-286 | 5.821 |
| MalT | 63-72 | 5.755 |
| GlpR | 262-281 | 5.674 |
| ModE | 181-207 | 5.561 |
| Mlc | 87-109 | 5.530 |
| NarP | 44-50 | 5.434 |
| NorR | 194-210 | 5.296 |