| TF name | Position | PWM scan score |
| ArcA | 64-124 | 38.234 |
| CysB | 57-98 | 29.279 |
| PurR | 30-45 | 20.350 |
| DcuR | 91-145 | 19.881 |
| CytR | 83-122 | 19.292 |
| OmpR | 85-104 | 18.344 |
| H-NS | 108-122 | 17.588 |
| SoxS | 235-252 | 16.500 |
| Rob | 159-179 | 16.183 |
| UlaR | 64-83 | 16.169 |
| Nac | 188-202 | 15.928 |
| CRP | 187-208 | 15.736 |
| TyrR | 80-101 | 15.672 |
| GcvA | 82-110 | 15.228 |
| FNR | 91-112 | 14.933 |
| AgaR | 54-77 | 14.642 |
| IHF | 61-73 | 14.456 |
| NagC | 75-97 | 14.439 |
| GalR | 30-45 | 14.370 |
| GalS | 30-45 | 14.370 |
| GntR | 187-206 | 14.306 |
| PhoB | 97-116 | 14.154 |
| DeoR | 157-172 | 14.089 |
| RhaS | 313-329 | 14.086 |
| Fur | 91-105 | 14.043 |
| Fis | 90-110 | 13.934 |
| PhoP | 91-107 | 13.394 |
| ArgR | 93-108 | 13.298 |
| GadE | 159-178 | 13.117 |
| OxyR | 57-101 | 13.073 |
| MarA | 289-309 | 12.766 |
| GlpR | 102-121 | 12.674 |
| XylR | 186-203 | 12.374 |
| IdnR | 48-63 | 12.111 |
| CpxR | 93-107 | 11.867 |
| FruR | 231-248 | 11.721 |
| DnaA | 194-202 | 11.366 |
| AraC | 40-57 | 11.298 |
| TorR | 195-204 | 11.140 |
| ArgP | 142-154 | 11.123 |
| Lrp | 55-66 | 11.054 |
| UxuR | 144-161 | 10.451 |
| Ada | 27-54 | 10.431 |
| MetR | 46-69 | 10.377 |
| Mlc | 75-97 | 10.028 |
| RcsB | 190-203 | 9.821 |
| NorR | 149-165 | 9.765 |
| PspF | 344-360 | 8.731 |
| MelR | 58-75 | 7.992 |
| NarL | 183-189 | 7.703 |
| ModE | 61-87 | 7.560 |
| FadR | 205-221 | 7.228 |
| CaiF | 137-181 | 6.915 |
| NarP | 7-13 | 6.627 |
| NtrC | 234-250 | 6.468 |