| TF name | Position | PWM scan score |
| ArcA | 283-343 | 20.514 |
| DeoR | 306-321 | 16.775 |
| FNR | 304-325 | 14.927 |
| H-NS | 308-322 | 14.825 |
| MarA | 295-315 | 14.739 |
| OmpR | 300-319 | 14.711 |
| CRP | 301-322 | 14.047 |
| NagC | 375-397 | 12.749 |
| CytR | 212-251 | 12.698 |
| GlpR | 309-328 | 12.631 |
| Rob | 213-233 | 12.579 |
| Ada | 43-70 | 12.462 |
| PhoP | 304-320 | 12.350 |
| CpxR | 306-320 | 11.867 |
| TyrR | 209-230 | 11.806 |
| Nac | 380-394 | 11.483 |
| CysB | 275-316 | 11.452 |
| GadE | 33-52 | 11.305 |
| AgaR | 60-83 | 11.109 |
| Mlc | 210-232 | 11.071 |
| Fis | 378-398 | 10.707 |
| MetJ | 360-367 | 10.363 |
| IHF | 79-91 | 10.307 |
| DcuR | 17-71 | 10.046 |
| PhoB | 223-242 | 10.029 |
| TorR | 66-75 | 9.678 |
| GcvA | 371-399 | 9.526 |
| NarL | 383-389 | 9.129 |
| ArgP | 312-324 | 9.015 |
| MetR | 332-355 | 8.987 |
| Lrp | 61-72 | 8.978 |
| OxyR | 274-318 | 8.970 |
| GntR | 208-227 | 8.962 |
| ArgR | 58-73 | 8.924 |
| LacI | 98-118 | 8.745 |
| MalT | 153-162 | 8.670 |
| NarP | 249-255 | 8.575 |
| UlaR | 196-215 | 8.551 |
| Fur | 304-318 | 8.444 |
| MelR | 227-244 | 8.317 |
| ModE | 202-228 | 8.249 |
| AraC | 79-96 | 8.037 |
| FruR | 219-236 | 7.947 |
| XylR | 56-73 | 7.888 |
| NorR | 206-222 | 7.082 |
| SoxS | 171-188 | 6.989 |
| DnaA | 65-73 | 6.651 |
| CueR | 109-127 | 6.433 |
| RcsB | 236-249 | 6.327 |
| GalS | 206-221 | 5.745 |
| GalR | 206-221 | 5.745 |
| UxuR | 274-291 | 5.650 |
| RhaS | 286-302 | 5.468 |
| IdnR | 155-170 | 5.171 |