| TF name | Position | PWM scan score |
| ArcA | 100-160 | 27.425 |
| CysB | 12-53 | 24.472 |
| AgaR | 111-134 | 23.117 |
| NagC | 45-67 | 20.725 |
| OxyR | 104-148 | 19.844 |
| Fur | 16-30 | 19.044 |
| CytR | 345-384 | 17.473 |
| OmpR | 48-67 | 17.440 |
| H-NS | 6-20 | 16.919 |
| MarA | 139-159 | 15.997 |
| GcvA | 53-81 | 15.873 |
| PhoB | 61-80 | 15.768 |
| DcuR | 13-67 | 15.580 |
| FNR | 6-27 | 15.435 |
| GadE | 61-80 | 15.078 |
| IHF | 45-57 | 14.856 |
| FhlA | 22-61 | 14.771 |
| GlpR | 50-69 | 14.503 |
| GntR | 71-90 | 13.272 |
| CRP | 8-29 | 13.211 |
| Rob | 263-283 | 13.123 |
| PspF | 38-54 | 13.042 |
| RcsB | 14-27 | 12.997 |
| DnaA | 129-137 | 12.693 |
| UlaR | 14-33 | 12.664 |
| MetR | 346-369 | 12.432 |
| MelR | 358-375 | 12.337 |
| TorR | 257-266 | 12.237 |
| Ada | 219-246 | 11.824 |
| TyrR | 305-326 | 11.657 |
| ModE | 19-45 | 11.488 |
| AraC | 20-37 | 11.413 |
| XylR | 227-244 | 10.892 |
| CpxR | 318-332 | 10.861 |
| Mlc | 50-72 | 10.740 |
| ArgP | 129-141 | 10.662 |
| IdnR | 66-81 | 10.570 |
| SoxS | 109-126 | 10.422 |
| Lrp | 118-129 | 10.373 |
| NarL | 61-67 | 10.241 |
| Fis | 51-71 | 10.111 |
| Nac | 318-332 | 9.930 |
| GalR | 46-61 | 9.741 |
| GalS | 46-61 | 9.741 |
| PhoP | 36-52 | 9.707 |
| ArgR | 14-29 | 9.643 |
| DeoR | 317-332 | 9.610 |
| NorR | 21-37 | 9.315 |
| LacI | 6-26 | 9.249 |
| PurR | 2-17 | 8.285 |
| TrpR | 64-81 | 8.277 |
| NarP | 379-385 | 7.762 |
| FruR | 184-201 | 7.684 |
| FadR | 49-65 | 7.669 |
| LexA | 81-100 | 7.276 |
| UxuR | 325-342 | 6.462 |
| MetJ | 131-138 | 5.941 |
| MalT | 191-200 | 5.686 |