| TF name | Position | PWM scan score |
| DcuR | 243-297 | 33.751 |
| ArcA | 226-286 | 33.125 |
| CytR | 258-297 | 25.201 |
| NagC | 134-156 | 22.711 |
| CysB | 255-296 | 22.154 |
| AgaR | 125-148 | 19.557 |
| Mlc | 262-284 | 19.322 |
| H-NS | 259-273 | 17.049 |
| CpxR | 248-262 | 16.893 |
| GadE | 135-154 | 16.446 |
| GcvA | 251-279 | 16.209 |
| OmpR | 265-284 | 15.913 |
| PhoP | 225-241 | 15.410 |
| OxyR | 191-235 | 15.316 |
| GntR | 211-230 | 15.114 |
| LacI | 162-182 | 15.091 |
| Fis | 343-363 | 15.039 |
| FNR | 247-268 | 14.923 |
| RcsB | 161-174 | 14.157 |
| CRP | 254-275 | 13.937 |
| PurR | 315-330 | 13.782 |
| IHF | 246-258 | 13.589 |
| PhoB | 351-370 | 13.492 |
| ArgP | 264-276 | 13.415 |
| MetR | 242-265 | 13.389 |
| GalR | 315-330 | 13.151 |
| GalS | 315-330 | 13.151 |
| ModE | 115-141 | 12.999 |
| GlpR | 270-289 | 12.731 |
| FhlA | 211-250 | 12.566 |
| MelR | 237-254 | 12.450 |
| Fur | 205-219 | 12.354 |
| DeoR | 274-289 | 12.130 |
| Ada | 243-270 | 12.063 |
| Nac | 291-305 | 11.534 |
| MarA | 188-208 | 11.329 |
| ArgR | 346-361 | 11.322 |
| UxuR | 243-260 | 11.173 |
| Lrp | 265-276 | 11.170 |
| SoxS | 345-362 | 10.897 |
| Rob | 341-361 | 10.867 |
| UlaR | 243-262 | 10.863 |
| IdnR | 138-153 | 9.838 |
| NarL | 213-219 | 9.444 |
| TyrR | 357-378 | 9.096 |
| NarP | 103-109 | 8.660 |
| FadR | 225-241 | 8.538 |
| AraC | 344-361 | 8.304 |
| RhaS | 332-348 | 8.285 |
| XylR | 54-71 | 8.065 |
| NorR | 256-272 | 7.979 |
| MetJ | 243-250 | 7.925 |
| TorR | 260-269 | 7.836 |
| DnaA | 363-371 | 7.751 |
| MalT | 100-109 | 6.500 |
| PspF | 13-29 | 6.327 |