| TF name | Position | PWM scan score |
| ArcA | 331-391 | 28.781 |
| DcuR | 329-383 | 25.968 |
| CysB | 342-383 | 21.674 |
| OmpR | 367-386 | 21.230 |
| CytR | 157-196 | 20.754 |
| GcvA | 299-327 | 18.432 |
| OxyR | 165-209 | 18.313 |
| Mlc | 350-372 | 17.551 |
| Fur | 208-222 | 17.214 |
| FNR | 204-225 | 16.125 |
| RcsB | 212-225 | 15.812 |
| CRP | 7-28 | 15.585 |
| Ada | 330-357 | 15.212 |
| AgaR | 358-381 | 14.635 |
| TyrR | 341-362 | 14.492 |
| UlaR | 346-365 | 14.450 |
| ModE | 97-123 | 14.378 |
| PhoB | 359-378 | 14.125 |
| NagC | 345-367 | 14.033 |
| DeoR | 203-218 | 13.852 |
| H-NS | 369-383 | 13.628 |
| GadE | 346-365 | 13.481 |
| Fis | 200-220 | 13.417 |
| PspF | 357-373 | 13.378 |
| IHF | 343-355 | 12.830 |
| SoxS | 318-335 | 12.789 |
| ArgP | 209-221 | 12.092 |
| UxuR | 370-387 | 11.878 |
| Lrp | 346-357 | 11.837 |
| CpxR | 343-357 | 11.717 |
| PhoP | 9-25 | 11.443 |
| ArgR | 206-221 | 11.383 |
| MelR | 172-189 | 10.802 |
| LexA | 274-293 | 10.782 |
| MetR | 310-333 | 10.768 |
| XylR | 377-394 | 10.557 |
| DnaA | 102-110 | 10.527 |
| NarL | 166-172 | 10.377 |
| Nac | 110-124 | 10.134 |
| Rob | 16-36 | 10.071 |
| MarA | 319-339 | 9.494 |
| GntR | 378-397 | 9.184 |
| NorR | 368-384 | 9.154 |
| IdnR | 298-313 | 8.794 |
| NarP | 240-246 | 8.660 |
| RhaS | 150-166 | 8.395 |
| MetJ | 104-111 | 8.203 |
| GlpR | 59-78 | 7.697 |
| NtrC | 208-224 | 7.092 |
| GalR | 316-331 | 7.072 |
| GalS | 316-331 | 7.072 |
| PurR | 283-298 | 7.029 |
| TorR | 48-57 | 6.899 |
| AraC | 188-205 | 6.757 |
| FruR | 175-192 | 6.327 |
| FadR | 173-189 | 6.176 |
| MalT | 70-79 | 5.706 |