| TF name | Position | PWM scan score |
| ArcA | 333-393 | 31.834 |
| CysB | 48-89 | 22.582 |
| OmpR | 342-361 | 18.201 |
| PurR | 114-129 | 17.944 |
| OxyR | 195-239 | 15.965 |
| AgaR | 73-96 | 15.417 |
| CpxR | 160-174 | 15.388 |
| IHF | 381-393 | 15.168 |
| Nac | 216-230 | 15.068 |
| SoxS | 105-122 | 14.821 |
| UlaR | 144-163 | 14.381 |
| MarA | 370-390 | 14.142 |
| CRP | 209-230 | 14.081 |
| FNR | 372-393 | 13.901 |
| ArgR | 366-381 | 13.477 |
| ArgP | 222-234 | 13.415 |
| AraC | 180-197 | 13.345 |
| GadE | 219-238 | 13.114 |
| CytR | 83-122 | 12.988 |
| Fis | 375-395 | 12.929 |
| XylR | 340-357 | 12.901 |
| FhlA | 353-392 | 12.873 |
| Rob | 215-235 | 12.783 |
| Mlc | 220-242 | 12.767 |
| TyrR | 324-345 | 12.637 |
| MetR | 330-353 | 12.510 |
| H-NS | 218-232 | 12.286 |
| PhoP | 225-241 | 12.052 |
| DcuR | 220-274 | 11.571 |
| RcsB | 215-228 | 11.477 |
| NtrC | 306-322 | 11.468 |
| Lrp | 217-228 | 11.463 |
| NagC | 221-243 | 11.410 |
| PhoB | 210-229 | 11.400 |
| GalS | 33-48 | 11.255 |
| GalR | 33-48 | 11.255 |
| Ada | 200-227 | 11.230 |
| GntR | 36-55 | 11.172 |
| ModE | 333-359 | 10.641 |
| IdnR | 377-392 | 10.637 |
| GcvA | 340-368 | 10.412 |
| PspF | 118-134 | 9.906 |
| GlpR | 220-239 | 9.853 |
| FadR | 353-369 | 9.852 |
| NorR | 61-77 | 9.587 |
| DnaA | 197-205 | 9.246 |
| DeoR | 366-381 | 9.193 |
| MelR | 185-202 | 9.020 |
| LexA | 217-236 | 8.661 |
| Fur | 75-89 | 8.258 |
| NarL | 219-225 | 7.927 |
| NarP | 378-384 | 7.762 |
| UxuR | 375-392 | 7.604 |
| TorR | 194-203 | 7.270 |
| CueR | 121-139 | 6.732 |
| RhaS | 267-283 | 6.354 |
| LacI | 247-267 | 5.740 |
| MetJ | 273-280 | 5.033 |