| TF name | Position | PWM scan score |
| ArcA | 53-113 | 31.834 |
| OmpR | 248-267 | 19.932 |
| CysB | 57-98 | 15.762 |
| LexA | 125-144 | 15.362 |
| IHF | 101-113 | 15.168 |
| H-NS | 249-263 | 15.012 |
| DcuR | 130-184 | 14.613 |
| GlpR | 251-270 | 14.517 |
| XylR | 283-300 | 14.325 |
| CytR | 92-131 | 14.321 |
| UlaR | 104-123 | 14.195 |
| MarA | 90-110 | 14.142 |
| Mlc | 268-290 | 14.092 |
| OxyR | 254-298 | 13.981 |
| FNR | 92-113 | 13.901 |
| ArgR | 86-101 | 13.477 |
| PhoP | 359-375 | 13.435 |
| PhoB | 131-150 | 13.430 |
| GcvA | 281-309 | 13.320 |
| CRP | 89-110 | 13.155 |
| Fis | 243-263 | 13.061 |
| Nac | 154-168 | 12.975 |
| FhlA | 73-112 | 12.873 |
| ModE | 238-264 | 12.767 |
| TyrR | 44-65 | 12.637 |
| MetR | 50-73 | 12.510 |
| SoxS | 119-136 | 12.418 |
| AgaR | 89-112 | 12.276 |
| PspF | 265-281 | 11.800 |
| CpxR | 337-351 | 11.757 |
| Rob | 247-267 | 11.475 |
| NtrC | 26-42 | 11.468 |
| RcsB | 45-58 | 11.393 |
| GadE | 248-267 | 11.217 |
| Lrp | 345-356 | 10.944 |
| DnaA | 391-399 | 10.817 |
| IdnR | 97-112 | 10.637 |
| Fur | 262-276 | 10.550 |
| FadR | 73-89 | 9.852 |
| Ada | 16-43 | 9.776 |
| NagC | 70-92 | 9.689 |
| NorR | 271-287 | 9.604 |
| NarP | 194-200 | 9.455 |
| MelR | 134-151 | 9.342 |
| DeoR | 86-101 | 9.193 |
| ArgP | 254-266 | 8.922 |
| RhaS | 188-204 | 8.788 |
| TorR | 368-377 | 8.529 |
| FruR | 306-323 | 8.400 |
| AraC | 56-73 | 8.162 |
| NarL | 334-340 | 8.043 |
| UxuR | 95-112 | 7.604 |
| GntR | 272-291 | 7.184 |
| LacI | 229-249 | 5.112 |