| TF name | Position | PWM scan score |
| ArcA | 213-273 | 32.865 |
| CysB | 214-255 | 21.399 |
| GadE | 209-228 | 21.309 |
| OmpR | 218-237 | 20.591 |
| Fur | 96-110 | 17.483 |
| Rob | 216-236 | 17.478 |
| H-NS | 345-359 | 16.501 |
| MetR | 335-358 | 16.191 |
| OxyR | 240-284 | 15.674 |
| DeoR | 265-280 | 15.600 |
| Mlc | 203-225 | 15.595 |
| Fis | 109-129 | 15.468 |
| GcvA | 344-372 | 15.231 |
| IHF | 347-359 | 14.757 |
| PspF | 89-105 | 14.714 |
| FNR | 96-117 | 14.189 |
| CRP | 100-121 | 14.139 |
| NagC | 327-349 | 14.138 |
| TorR | 65-74 | 14.100 |
| CytR | 59-98 | 14.088 |
| ArgR | 94-109 | 13.827 |
| GalR | 3-18 | 13.411 |
| GalS | 3-18 | 13.411 |
| Lrp | 206-217 | 13.055 |
| Nac | 211-225 | 12.734 |
| PhoP | 103-119 | 12.727 |
| NorR | 95-111 | 11.662 |
| UlaR | 378-397 | 11.654 |
| ArgP | 346-358 | 11.548 |
| AgaR | 100-123 | 11.486 |
| AraC | 213-230 | 11.104 |
| MarA | 340-360 | 10.951 |
| ModE | 191-217 | 10.885 |
| PhoB | 210-229 | 10.866 |
| RcsB | 84-97 | 10.848 |
| DcuR | 83-137 | 10.618 |
| NarL | 91-97 | 10.377 |
| CpxR | 11-25 | 10.258 |
| SoxS | 205-222 | 10.242 |
| XylR | 322-339 | 9.923 |
| CaiF | 102-146 | 9.446 |
| GntR | 104-123 | 9.208 |
| Ada | 123-150 | 8.890 |
| GlpR | 71-90 | 8.883 |
| TyrR | 369-390 | 8.799 |
| PurR | 3-18 | 8.302 |
| MelR | 222-239 | 8.253 |
| UxuR | 73-90 | 8.134 |
| LexA | 3-22 | 7.920 |
| NarP | 109-115 | 7.762 |
| MalT | 48-57 | 7.755 |
| DnaA | 293-301 | 7.189 |
| FadR | 79-95 | 6.905 |
| NtrC | 150-166 | 6.812 |
| LacI | 263-283 | 6.472 |
| IdnR | 294-309 | 6.373 |
| FhlA | 357-396 | 6.226 |
| CueR | 181-199 | 6.151 |
| MetJ | 283-290 | 6.111 |