| TF name | Position | PWM scan score |
| ArcA | 244-304 | 30.112 |
| CysB | 307-348 | 26.672 |
| OmpR | 301-320 | 23.733 |
| GadE | 315-334 | 15.716 |
| H-NS | 313-327 | 15.191 |
| AgaR | 24-47 | 15.103 |
| Nac | 38-52 | 15.058 |
| FNR | 22-43 | 14.813 |
| DeoR | 250-265 | 14.759 |
| GlpR | 267-286 | 14.717 |
| ModE | 97-123 | 14.698 |
| IdnR | 32-47 | 14.495 |
| IHF | 298-310 | 14.374 |
| CytR | 38-77 | 14.036 |
| RcsB | 301-314 | 13.943 |
| PhoP | 300-316 | 13.080 |
| GcvA | 321-349 | 13.007 |
| CpxR | 250-264 | 12.680 |
| Mlc | 282-304 | 12.624 |
| MarA | 262-282 | 12.607 |
| CRP | 283-304 | 12.545 |
| XylR | 337-354 | 12.421 |
| Rob | 301-321 | 12.034 |
| PhoB | 302-321 | 12.004 |
| NtrC | 80-96 | 11.941 |
| Fur | 335-349 | 11.587 |
| ArgR | 336-351 | 11.419 |
| PurR | 298-313 | 11.320 |
| MetR | 287-310 | 11.254 |
| TorR | 2-11 | 11.105 |
| DcuR | 285-339 | 10.930 |
| MelR | 275-292 | 10.885 |
| NorR | 243-259 | 10.648 |
| Fis | 26-46 | 10.366 |
| Lrp | 34-45 | 10.351 |
| FruR | 241-258 | 10.124 |
| ArgP | 38-50 | 9.930 |
| FadR | 224-240 | 9.836 |
| GntR | 230-249 | 9.574 |
| NagC | 157-179 | 9.437 |
| UlaR | 39-58 | 9.288 |
| Ada | 19-46 | 9.236 |
| CaiF | 250-294 | 9.203 |
| NarL | 343-349 | 9.197 |
| UxuR | 4-21 | 9.118 |
| TyrR | 322-343 | 9.080 |
| DnaA | 161-169 | 9.041 |
| PspF | 341-357 | 8.936 |
| AraC | 277-294 | 8.759 |
| OxyR | 34-78 | 8.725 |
| SoxS | 33-50 | 8.697 |
| NarP | 239-245 | 8.594 |
| LacI | 47-67 | 8.503 |
| MetJ | 223-230 | 7.986 |
| FhlA | 250-289 | 7.790 |
| LexA | 1-20 | 7.091 |
| TrpR | 308-325 | 6.219 |