| TF name | Position | PWM scan score |
| ArcA | 309-369 | 30.473 |
| Fur | 327-341 | 17.540 |
| CysB | 3-44 | 17.061 |
| AgaR | 68-91 | 16.599 |
| ModE | 4-30 | 16.331 |
| H-NS | 324-338 | 16.257 |
| OmpR | 134-153 | 15.279 |
| NorR | 9-25 | 15.214 |
| CytR | 314-353 | 14.621 |
| OxyR | 206-250 | 14.483 |
| ArgP | 150-162 | 14.054 |
| GcvA | 318-346 | 13.937 |
| PhoB | 26-45 | 13.728 |
| CRP | 135-156 | 13.497 |
| PspF | 123-139 | 13.314 |
| Fis | 315-335 | 13.233 |
| DcuR | 21-75 | 12.954 |
| LacI | 334-354 | 12.351 |
| TyrR | 34-55 | 12.287 |
| FNR | 206-227 | 12.233 |
| IHF | 215-227 | 12.221 |
| NagC | 337-359 | 12.044 |
| Mlc | 148-170 | 12.021 |
| MetR | 55-78 | 11.887 |
| TorR | 74-83 | 11.736 |
| ArgR | 112-127 | 11.490 |
| UlaR | 354-373 | 11.260 |
| XylR | 32-49 | 11.226 |
| PhoP | 199-215 | 11.213 |
| MarA | 204-224 | 11.169 |
| Lrp | 330-341 | 11.039 |
| FadR | 111-127 | 10.819 |
| IdnR | 139-154 | 10.748 |
| Nac | 38-52 | 10.746 |
| GlpR | 139-158 | 10.495 |
| UxuR | 262-279 | 10.461 |
| AraC | 327-344 | 10.459 |
| RcsB | 4-17 | 10.395 |
| GadE | 362-381 | 10.100 |
| CpxR | 46-60 | 9.910 |
| SoxS | 321-338 | 9.684 |
| Ada | 132-159 | 9.427 |
| Rob | 7-27 | 9.422 |
| NarL | 217-223 | 9.376 |
| DeoR | 339-354 | 9.046 |
| FhlA | 309-348 | 8.951 |
| MetJ | 36-43 | 8.430 |
| DnaA | 2-10 | 8.160 |
| GntR | 49-68 | 8.068 |
| MelR | 349-366 | 7.848 |
| NtrC | 159-175 | 7.201 |
| LexA | 110-129 | 7.132 |
| MalT | 168-177 | 5.842 |
| PurR | 352-367 | 5.651 |
| TrpR | 29-46 | 5.150 |