| TF name | Position | PWM scan score |
| ArcA | 334-394 | 31.700 |
| OmpR | 90-109 | 21.250 |
| NagC | 361-383 | 20.887 |
| CysB | 334-375 | 20.208 |
| GadE | 342-361 | 18.601 |
| Fur | 361-375 | 17.654 |
| OxyR | 353-397 | 17.500 |
| FNR | 361-382 | 16.898 |
| Rob | 89-109 | 16.461 |
| ModE | 159-185 | 16.301 |
| CytR | 340-379 | 16.275 |
| Fis | 371-391 | 15.675 |
| H-NS | 374-388 | 15.414 |
| GcvA | 361-389 | 15.077 |
| CRP | 371-392 | 14.775 |
| PhoP | 202-218 | 14.726 |
| PhoB | 91-110 | 14.446 |
| Nac | 204-218 | 13.862 |
| RcsB | 279-292 | 13.723 |
| IHF | 159-171 | 12.826 |
| Lrp | 358-369 | 12.403 |
| Mlc | 143-165 | 12.379 |
| IdnR | 291-306 | 12.299 |
| AgaR | 369-392 | 11.781 |
| MarA | 346-366 | 11.685 |
| TyrR | 85-106 | 11.165 |
| Ada | 301-328 | 10.968 |
| RhaS | 80-96 | 10.776 |
| DeoR | 203-218 | 10.418 |
| CpxR | 340-354 | 10.280 |
| PspF | 358-374 | 10.175 |
| NarL | 67-73 | 10.130 |
| GlpR | 379-398 | 10.110 |
| SoxS | 365-382 | 10.052 |
| UlaR | 13-32 | 10.009 |
| XylR | 336-353 | 9.964 |
| DcuR | 73-127 | 9.724 |
| FhlA | 237-276 | 9.671 |
| TorR | 373-382 | 9.263 |
| FruR | 123-140 | 9.257 |
| GalS | 87-102 | 8.981 |
| GalR | 87-102 | 8.981 |
| ArgP | 96-108 | 8.922 |
| GntR | 371-390 | 8.728 |
| AraC | 329-346 | 8.687 |
| MelR | 361-378 | 8.567 |
| NorR | 342-358 | 8.345 |
| UxuR | 156-173 | 8.067 |
| ArgR | 367-382 | 7.978 |
| MetR | 8-31 | 7.832 |
| DnaA | 70-78 | 6.809 |
| PurR | 87-102 | 6.767 |
| NarP | 374-380 | 6.591 |
| LacI | 252-272 | 6.314 |
| CaiF | 202-246 | 6.080 |
| FadR | 294-310 | 5.815 |
| MetJ | 234-241 | 5.813 |
| LexA | 173-192 | 5.378 |