| TF name | Position | PWM scan score |
| ArcA | 335-395 | 26.349 |
| OmpR | 374-393 | 18.859 |
| NagC | 374-396 | 17.904 |
| UxuR | 319-336 | 15.205 |
| OxyR | 309-353 | 15.083 |
| FNR | 313-334 | 15.079 |
| Mlc | 310-332 | 14.786 |
| PhoP | 378-394 | 14.523 |
| GadE | 48-67 | 14.507 |
| Fis | 113-133 | 14.351 |
| ArgP | 48-60 | 13.001 |
| SoxS | 40-57 | 12.926 |
| Rob | 344-364 | 12.793 |
| ArgR | 323-338 | 12.138 |
| AgaR | 350-373 | 11.889 |
| H-NS | 317-331 | 11.883 |
| CysB | 314-355 | 11.399 |
| GntR | 244-263 | 11.320 |
| IHF | 292-304 | 11.241 |
| CRP | 310-331 | 11.190 |
| Nac | 349-363 | 10.881 |
| LacI | 40-60 | 10.857 |
| PhoB | 363-382 | 10.567 |
| CytR | 340-379 | 10.032 |
| Lrp | 106-117 | 9.772 |
| MetR | 320-343 | 9.738 |
| MelR | 237-254 | 9.253 |
| LexA | 117-136 | 9.243 |
| MarA | 111-131 | 9.141 |
| UlaR | 363-382 | 9.100 |
| TyrR | 357-378 | 9.083 |
| RcsB | 325-338 | 9.082 |
| DnaA | 44-52 | 9.055 |
| DeoR | 368-383 | 8.813 |
| GlpR | 183-202 | 8.722 |
| FadR | 6-22 | 8.379 |
| NarL | 108-114 | 7.927 |
| Ada | 357-384 | 7.913 |
| NorR | 360-376 | 7.465 |
| CpxR | 368-382 | 7.449 |
| NarP | 56-62 | 7.056 |
| DcuR | 328-382 | 6.968 |
| MetJ | 355-362 | 6.360 |
| TorR | 276-285 | 6.344 |
| MalT | 214-223 | 6.327 |
| ModE | 357-383 | 6.293 |
| FhlA | 313-352 | 6.029 |
| Fur | 331-345 | 5.839 |
| XylR | 376-393 | 5.798 |
| PspF | 246-262 | 5.501 |
| NtrC | 265-281 | 5.371 |
| IdnR | 357-372 | 5.124 |