| TF name | Position | PWM scan score |
| ArcA | 326-386 | 25.025 |
| FNR | 179-200 | 18.071 |
| CRP | 40-61 | 17.582 |
| CpxR | 120-134 | 16.345 |
| DeoR | 94-109 | 14.712 |
| Fis | 90-110 | 14.344 |
| OmpR | 179-198 | 13.477 |
| IHF | 101-113 | 13.181 |
| PhoB | 239-258 | 13.077 |
| MarA | 298-318 | 12.688 |
| CysB | 223-264 | 12.675 |
| GcvA | 366-394 | 12.021 |
| GadE | 182-201 | 11.942 |
| ModE | 338-364 | 11.788 |
| GalR | 63-78 | 11.598 |
| GalS | 63-78 | 11.598 |
| DcuR | 309-363 | 11.588 |
| PhoP | 128-144 | 11.519 |
| GntR | 59-78 | 11.476 |
| CytR | 272-311 | 11.356 |
| TyrR | 84-105 | 11.335 |
| AraC | 82-99 | 11.254 |
| ArgR | 191-206 | 11.205 |
| TorR | 100-109 | 11.099 |
| UxuR | 319-336 | 11.089 |
| OxyR | 338-382 | 11.086 |
| Mlc | 91-113 | 10.932 |
| H-NS | 181-195 | 10.668 |
| Rob | 333-353 | 10.547 |
| NarL | 9-15 | 10.377 |
| Nac | 318-332 | 10.192 |
| RcsB | 5-18 | 9.522 |
| Lrp | 127-138 | 9.283 |
| XylR | 177-194 | 9.240 |
| IdnR | 83-98 | 9.153 |
| MelR | 192-209 | 8.885 |
| ArgP | 89-101 | 8.855 |
| DnaA | 92-100 | 8.836 |
| NagC | 358-380 | 8.630 |
| LexA | 21-40 | 8.618 |
| PspF | 4-20 | 8.570 |
| Fur | 62-76 | 8.561 |
| SoxS | 250-267 | 8.561 |
| NarP | 361-367 | 8.509 |
| PurR | 63-78 | 8.485 |
| FruR | 244-261 | 8.415 |
| MetJ | 231-238 | 8.249 |
| GlpR | 287-306 | 8.162 |
| NorR | 34-50 | 7.915 |
| UlaR | 239-258 | 7.850 |
| AgaR | 60-83 | 7.838 |
| Ada | 163-190 | 7.718 |
| MetR | 89-112 | 7.343 |
| RhaS | 167-183 | 7.207 |
| NtrC | 173-189 | 6.773 |
| FadR | 120-136 | 5.885 |
| TrpR | 145-162 | 5.696 |
| FhlA | 332-371 | 5.409 |