| TF name | Position | PWM scan score |
| ArcA | 271-331 | 20.402 |
| UlaR | 314-333 | 16.314 |
| NagC | 270-292 | 14.751 |
| AgaR | 296-319 | 14.610 |
| RcsB | 278-291 | 14.029 |
| PhoB | 273-292 | 13.639 |
| DcuR | 282-336 | 13.559 |
| PspF | 328-344 | 13.371 |
| TyrR | 367-388 | 13.176 |
| GcvA | 278-306 | 13.005 |
| CRP | 283-304 | 12.987 |
| DeoR | 199-214 | 12.934 |
| IdnR | 343-358 | 12.749 |
| OmpR | 193-212 | 12.594 |
| IHF | 206-218 | 12.367 |
| DnaA | 28-36 | 12.284 |
| CysB | 338-379 | 11.990 |
| H-NS | 374-388 | 11.604 |
| Mlc | 25-47 | 11.151 |
| PhoP | 297-313 | 10.927 |
| GntR | 283-302 | 10.545 |
| Fis | 163-183 | 10.449 |
| Lrp | 280-291 | 10.446 |
| LacI | 138-158 | 10.350 |
| GadE | 199-218 | 10.136 |
| FNR | 323-344 | 10.038 |
| CytR | 11-50 | 10.018 |
| Rob | 192-212 | 9.980 |
| ModE | 272-298 | 9.537 |
| MarA | 155-175 | 9.508 |
| Nac | 260-274 | 9.055 |
| Ada | 299-326 | 8.964 |
| ArgP | 199-211 | 8.922 |
| ArgR | 293-308 | 8.536 |
| MalT | 212-221 | 8.527 |
| AraC | 305-322 | 8.320 |
| FadR | 367-383 | 8.275 |
| CpxR | 190-204 | 8.255 |
| TorR | 82-91 | 8.159 |
| MetR | 162-185 | 8.122 |
| OxyR | 308-352 | 8.118 |
| XylR | 294-311 | 7.732 |
| GalS | 379-394 | 7.723 |
| GalR | 379-394 | 7.723 |
| RhaS | 119-135 | 7.323 |
| NarL | 84-90 | 6.942 |
| SoxS | 362-379 | 6.815 |
| LexA | 35-54 | 6.612 |
| Fur | 378-392 | 6.566 |
| UxuR | 6-23 | 6.529 |
| MelR | 203-220 | 6.173 |
| GlpR | 190-209 | 6.135 |
| MetJ | 212-219 | 5.889 |
| FruR | 268-285 | 5.576 |
| NorR | 56-72 | 5.323 |