| TF name | Position | PWM scan score |
| ArcA | 9-69 | 38.748 |
| CysB | 16-57 | 25.584 |
| OxyR | 15-59 | 21.970 |
| CytR | 349-388 | 21.445 |
| Mlc | 352-374 | 18.990 |
| DcuR | 343-397 | 18.891 |
| OmpR | 359-378 | 18.698 |
| MarA | 44-64 | 18.044 |
| GadE | 40-59 | 16.174 |
| ArgR | 372-387 | 16.172 |
| Fis | 33-53 | 16.093 |
| AgaR | 360-383 | 15.847 |
| XylR | 369-386 | 15.744 |
| FNR | 27-48 | 15.664 |
| GcvA | 138-166 | 15.518 |
| UlaR | 63-82 | 15.498 |
| IHF | 68-80 | 15.279 |
| PhoP | 37-53 | 15.278 |
| H-NS | 151-165 | 14.854 |
| SoxS | 54-71 | 14.786 |
| CRP | 120-141 | 14.611 |
| CpxR | 367-381 | 14.421 |
| NagC | 147-169 | 13.711 |
| MetR | 334-357 | 13.308 |
| DeoR | 38-53 | 13.166 |
| GntR | 24-43 | 13.134 |
| Fur | 26-40 | 12.692 |
| ArgP | 73-85 | 12.627 |
| PhoB | 42-61 | 12.619 |
| Rob | 358-378 | 12.115 |
| RcsB | 371-384 | 11.517 |
| AraC | 68-85 | 11.118 |
| Ada | 8-35 | 10.868 |
| NorR | 71-87 | 10.856 |
| TrpR | 171-188 | 10.766 |
| Lrp | 148-159 | 10.700 |
| TorR | 145-154 | 10.649 |
| GalS | 375-390 | 10.473 |
| GalR | 375-390 | 10.473 |
| Nac | 334-348 | 10.444 |
| GlpR | 26-45 | 10.346 |
| TyrR | 364-385 | 9.933 |
| MelR | 343-360 | 9.799 |
| ModE | 10-36 | 9.435 |
| PspF | 139-155 | 9.104 |
| NarL | 150-156 | 8.131 |
| FadR | 336-352 | 7.969 |
| IdnR | 365-380 | 7.874 |
| DnaA | 378-386 | 7.617 |
| NtrC | 167-183 | 7.530 |
| LacI | 76-96 | 6.808 |
| UxuR | 293-310 | 6.620 |
| MetJ | 348-355 | 6.057 |
| NarP | 307-313 | 5.566 |
| LexA | 211-230 | 5.341 |
| FruR | 376-393 | 5.136 |