| TF name | Position | PWM scan score |
| ArcA | 53-113 | 26.356 |
| CysB | 293-334 | 19.431 |
| XylR | 88-105 | 18.806 |
| CRP | 239-260 | 17.818 |
| OmpR | 318-337 | 17.456 |
| GntR | 237-256 | 16.910 |
| GadE | 17-36 | 16.564 |
| PhoB | 17-36 | 16.347 |
| GcvA | 2-30 | 15.920 |
| H-NS | 287-301 | 15.414 |
| AgaR | 232-255 | 15.265 |
| ArgR | 285-300 | 14.508 |
| DnaA | 215-223 | 14.299 |
| IHF | 230-242 | 14.166 |
| FNR | 242-263 | 13.963 |
| UxuR | 210-227 | 13.946 |
| MetR | 100-123 | 13.858 |
| Rob | 127-147 | 13.128 |
| LacI | 352-372 | 12.727 |
| CytR | 209-248 | 12.488 |
| FhlA | 51-90 | 12.256 |
| TrpR | 70-87 | 12.051 |
| Nac | 317-331 | 11.998 |
| SoxS | 3-20 | 11.958 |
| PhoP | 225-241 | 11.768 |
| MarA | 246-266 | 11.753 |
| PspF | 185-201 | 11.689 |
| NtrC | 85-101 | 10.860 |
| Lrp | 168-179 | 10.761 |
| CueR | 113-131 | 10.640 |
| Fur | 129-143 | 10.617 |
| Ada | 132-159 | 10.243 |
| ArgP | 292-304 | 10.185 |
| Fis | 282-302 | 10.116 |
| Mlc | 212-234 | 10.039 |
| DeoR | 224-239 | 10.032 |
| CpxR | 141-155 | 9.573 |
| OxyR | 217-261 | 9.571 |
| NagC | 216-238 | 9.454 |
| FruR | 347-364 | 9.375 |
| IdnR | 178-193 | 9.304 |
| AraC | 282-299 | 9.096 |
| RcsB | 186-199 | 9.033 |
| ModE | 281-307 | 8.987 |
| RhaS | 9-25 | 8.928 |
| GlpR | 50-69 | 8.880 |
| NarL | 212-218 | 8.685 |
| NarP | 336-342 | 8.660 |
| TyrR | 248-269 | 8.602 |
| NorR | 351-367 | 8.526 |
| PurR | 315-330 | 8.023 |
| MetJ | 106-113 | 7.576 |
| DcuR | 20-74 | 7.310 |
| TorR | 170-179 | 7.068 |
| UlaR | 42-61 | 6.709 |
| MalT | 270-279 | 6.513 |
| CaiF | 115-159 | 6.303 |
| GalR | 235-250 | 5.622 |
| GalS | 235-250 | 5.622 |
| FadR | 75-91 | 5.560 |