| TF name | Position | PWM scan score |
| ArcA | 14-74 | 29.777 |
| CysB | 14-55 | 23.646 |
| Ada | 284-311 | 22.471 |
| GcvA | 186-214 | 22.395 |
| CytR | 17-56 | 19.242 |
| OmpR | 174-193 | 17.737 |
| OxyR | 1-45 | 16.654 |
| Mlc | 268-290 | 16.529 |
| Nac | 258-272 | 15.496 |
| MarA | 232-252 | 15.439 |
| PhoB | 241-260 | 15.236 |
| Fur | 139-153 | 14.780 |
| ArgR | 13-28 | 14.779 |
| GadE | 140-159 | 14.697 |
| NagC | 179-201 | 14.274 |
| AgaR | 258-281 | 14.119 |
| NorR | 20-36 | 13.334 |
| FNR | 347-368 | 12.967 |
| MetR | 178-201 | 12.678 |
| CRP | 15-36 | 12.626 |
| GlpR | 246-265 | 12.539 |
| H-NS | 176-190 | 12.452 |
| CpxR | 33-47 | 12.018 |
| IHF | 296-308 | 11.854 |
| ModE | 24-50 | 11.851 |
| Fis | 277-297 | 11.814 |
| Lrp | 362-373 | 11.647 |
| DeoR | 255-270 | 11.372 |
| ArgP | 279-291 | 11.287 |
| UxuR | 28-45 | 11.173 |
| XylR | 63-80 | 10.832 |
| AraC | 19-36 | 10.732 |
| SoxS | 18-35 | 10.356 |
| NtrC | 244-260 | 10.096 |
| UlaR | 185-204 | 10.093 |
| FadR | 118-134 | 10.070 |
| RcsB | 19-32 | 9.965 |
| PhoP | 234-250 | 9.908 |
| TyrR | 264-285 | 9.847 |
| Rob | 136-156 | 9.792 |
| MetJ | 136-143 | 9.666 |
| NarL | 29-35 | 9.580 |
| DcuR | 271-325 | 9.348 |
| MelR | 346-363 | 9.137 |
| PspF | 185-201 | 9.104 |
| GntR | 172-191 | 9.084 |
| DnaA | 306-314 | 8.836 |
| LexA | 22-41 | 7.427 |
| FruR | 32-49 | 7.133 |
| LacI | 146-166 | 6.660 |
| TrpR | 256-273 | 6.604 |
| TorR | 271-280 | 6.577 |
| NarP | 129-135 | 6.561 |
| IdnR | 269-284 | 5.725 |
| MalT | 74-83 | 5.647 |
| RhaS | 153-169 | 5.524 |
| PurR | 296-311 | 5.194 |