| TF name | Position | PWM scan score |
| OxyR | 120-164 | 27.054 |
| ArcA | 320-380 | 22.915 |
| OmpR | 155-174 | 20.738 |
| GadE | 346-365 | 20.587 |
| PhoP | 117-133 | 19.219 |
| DcuR | 114-168 | 18.897 |
| H-NS | 158-172 | 18.136 |
| PhoB | 156-175 | 17.971 |
| CytR | 101-140 | 17.319 |
| FNR | 87-108 | 16.382 |
| CysB | 62-103 | 15.966 |
| CRP | 329-350 | 15.370 |
| TyrR | 258-279 | 15.148 |
| ModE | 53-79 | 14.575 |
| Fur | 353-367 | 14.520 |
| Mlc | 67-89 | 14.216 |
| GcvA | 338-366 | 14.171 |
| IHF | 53-65 | 13.842 |
| SoxS | 52-69 | 13.438 |
| ArgR | 152-167 | 13.383 |
| MarA | 205-225 | 12.557 |
| NagC | 349-371 | 12.489 |
| Nac | 378-392 | 12.378 |
| PspF | 373-389 | 12.216 |
| AgaR | 346-369 | 12.185 |
| DeoR | 152-167 | 12.125 |
| ArgP | 263-275 | 12.103 |
| Fis | 26-46 | 12.052 |
| MetJ | 143-150 | 11.889 |
| RcsB | 119-132 | 11.602 |
| XylR | 154-171 | 11.564 |
| GntR | 329-348 | 11.340 |
| UlaR | 350-369 | 11.315 |
| Ada | 262-289 | 11.166 |
| Lrp | 345-356 | 10.861 |
| TorR | 379-388 | 10.649 |
| CaiF | 324-368 | 10.647 |
| AraC | 58-75 | 10.101 |
| UxuR | 124-141 | 10.028 |
| Rob | 1-21 | 9.892 |
| NorR | 358-374 | 9.765 |
| NarL | 63-69 | 9.376 |
| LexA | 23-42 | 9.337 |
| GlpR | 379-398 | 9.291 |
| CpxR | 343-357 | 9.011 |
| NarP | 248-254 | 8.227 |
| MetR | 260-283 | 8.168 |
| FruR | 108-125 | 8.159 |
| DnaA | 187-195 | 8.112 |
| FadR | 341-357 | 7.673 |
| MalT | 71-80 | 7.618 |
| PurR | 119-134 | 7.266 |
| MelR | 265-282 | 7.054 |
| LacI | 359-379 | 6.227 |
| GalS | 333-348 | 5.994 |
| GalR | 333-348 | 5.994 |
| RhaS | 87-103 | 5.862 |
| CueR | 77-95 | 5.335 |
| IdnR | 186-201 | 5.218 |