| TF name | Position | PWM scan score |
| ArcA | 336-396 | 33.857 |
| Rob | 351-371 | 18.407 |
| Mlc | 317-339 | 17.112 |
| OmpR | 342-361 | 16.899 |
| DcuR | 297-351 | 16.557 |
| TyrR | 310-331 | 16.421 |
| ModE | 172-198 | 16.386 |
| CytR | 305-344 | 15.450 |
| PhoB | 360-379 | 14.974 |
| CRP | 359-380 | 14.841 |
| AgaR | 335-358 | 14.767 |
| FNR | 262-283 | 14.747 |
| ArgP | 335-347 | 14.692 |
| ArgR | 359-374 | 14.556 |
| H-NS | 271-285 | 14.155 |
| OxyR | 264-308 | 14.135 |
| NagC | 346-368 | 13.947 |
| SoxS | 278-295 | 13.569 |
| CysB | 273-314 | 13.485 |
| GlpR | 352-371 | 13.403 |
| RcsB | 354-367 | 13.259 |
| GadE | 327-346 | 13.152 |
| MetR | 248-271 | 12.677 |
| PhoP | 207-223 | 11.946 |
| IHF | 336-348 | 11.674 |
| MarA | 48-68 | 11.634 |
| Nac | 77-91 | 11.386 |
| Fis | 356-376 | 11.372 |
| UxuR | 128-145 | 11.089 |
| GntR | 282-301 | 10.772 |
| CpxR | 153-167 | 10.511 |
| LexA | 273-292 | 10.421 |
| PurR | 167-182 | 10.355 |
| AraC | 304-321 | 10.324 |
| IdnR | 164-179 | 10.214 |
| NarL | 292-298 | 9.994 |
| GcvA | 234-262 | 9.738 |
| Lrp | 270-281 | 9.119 |
| TorR | 243-252 | 9.030 |
| DeoR | 85-100 | 9.020 |
| PspF | 51-67 | 8.946 |
| Ada | 169-196 | 8.799 |
| UlaR | 127-146 | 8.496 |
| NarP | 300-306 | 8.306 |
| MetJ | 254-261 | 8.249 |
| DnaA | 270-278 | 8.160 |
| MalT | 139-148 | 8.155 |
| Fur | 216-230 | 7.809 |
| NorR | 305-321 | 7.710 |
| MelR | 380-397 | 7.316 |
| RhaS | 82-98 | 6.666 |
| XylR | 152-169 | 6.551 |
| LacI | 48-68 | 5.777 |
| FruR | 132-149 | 5.346 |
| GalS | 33-48 | 5.193 |
| GalR | 33-48 | 5.193 |