| TF name | Position | PWM scan score |
| CysB | 166-207 | 20.432 |
| UxuR | 259-276 | 19.573 |
| ArcA | 180-240 | 19.024 |
| FNR | 270-291 | 18.589 |
| OxyR | 4-48 | 17.968 |
| OmpR | 378-397 | 17.073 |
| IHF | 372-384 | 16.407 |
| GadE | 186-205 | 15.846 |
| NagC | 130-152 | 15.151 |
| H-NS | 376-390 | 14.541 |
| TorR | 273-282 | 14.333 |
| PhoB | 378-397 | 14.290 |
| PhoP | 382-398 | 14.205 |
| AgaR | 101-124 | 13.008 |
| LacI | 173-193 | 12.992 |
| GcvA | 368-396 | 12.985 |
| Nac | 68-82 | 12.825 |
| DnaA | 118-126 | 12.771 |
| Rob | 52-72 | 12.417 |
| Lrp | 142-153 | 12.334 |
| RcsB | 64-77 | 12.160 |
| Fis | 377-397 | 12.136 |
| Fur | 233-247 | 12.100 |
| GlpR | 203-222 | 11.902 |
| MetJ | 97-104 | 11.615 |
| XylR | 375-392 | 11.524 |
| ModE | 259-285 | 11.498 |
| MarA | 223-243 | 11.404 |
| DeoR | 213-228 | 11.080 |
| MetR | 305-328 | 10.993 |
| ArgP | 33-45 | 10.946 |
| AraC | 64-81 | 10.701 |
| CRP | 222-243 | 10.436 |
| ArgR | 276-291 | 9.888 |
| RhaS | 331-347 | 9.807 |
| SoxS | 48-65 | 9.289 |
| UlaR | 310-329 | 9.098 |
| Mlc | 204-226 | 8.851 |
| Ada | 90-117 | 8.702 |
| NarP | 186-192 | 8.306 |
| TyrR | 180-201 | 8.276 |
| NarL | 37-43 | 8.154 |
| IdnR | 119-134 | 8.099 |
| PspF | 271-287 | 8.006 |
| FruR | 146-163 | 7.916 |
| CpxR | 146-160 | 7.798 |
| PurR | 235-250 | 7.251 |
| CueR | 380-398 | 7.239 |
| GntR | 206-225 | 6.681 |
| CytR | 236-275 | 6.610 |
| NorR | 102-118 | 6.535 |
| GalS | 137-152 | 6.450 |
| GalR | 137-152 | 6.450 |
| MelR | 376-393 | 6.080 |
| FadR | 202-218 | 5.494 |
| MalT | 304-313 | 5.471 |