| TF name | Position | PWM scan score |
| ArcA | 54-114 | 19.390 |
| DeoR | 200-215 | 16.718 |
| RcsB | 202-215 | 15.274 |
| CRP | 164-185 | 15.094 |
| Nac | 51-65 | 14.742 |
| GcvA | 311-339 | 14.472 |
| Fur | 167-181 | 14.418 |
| PhoP | 239-255 | 14.048 |
| FNR | 228-249 | 13.650 |
| PhoB | 197-216 | 13.370 |
| NagC | 170-192 | 12.961 |
| SoxS | 112-129 | 12.488 |
| NorR | 166-182 | 11.917 |
| AraC | 118-135 | 11.914 |
| MetR | 132-155 | 11.895 |
| XylR | 166-183 | 11.834 |
| MetJ | 81-88 | 11.820 |
| AgaR | 165-188 | 11.785 |
| CysB | 48-89 | 11.636 |
| TyrR | 166-187 | 11.465 |
| LacI | 242-262 | 11.431 |
| UlaR | 173-192 | 11.361 |
| DnaA | 275-283 | 11.178 |
| ArgP | 373-385 | 11.056 |
| CytR | 28-67 | 11.027 |
| ModE | 156-182 | 11.025 |
| MarA | 110-130 | 10.664 |
| Lrp | 204-215 | 10.629 |
| H-NS | 140-154 | 10.619 |
| Fis | 234-254 | 10.150 |
| IHF | 137-149 | 10.043 |
| OmpR | 128-147 | 9.738 |
| GlpR | 233-252 | 9.636 |
| NarL | 169-175 | 9.580 |
| UxuR | 345-362 | 9.561 |
| FhlA | 317-356 | 9.340 |
| CpxR | 265-279 | 9.198 |
| Rob | 290-310 | 9.020 |
| Ada | 29-56 | 8.994 |
| MelR | 311-328 | 8.629 |
| LexA | 342-361 | 8.603 |
| DcuR | 176-230 | 8.583 |
| PspF | 196-212 | 8.375 |
| MalT | 42-51 | 8.362 |
| TorR | 167-176 | 7.963 |
| OxyR | 115-159 | 7.848 |
| IdnR | 157-172 | 7.555 |
| GadE | 112-131 | 7.538 |
| GntR | 180-199 | 7.484 |
| ArgR | 291-306 | 7.253 |
| FruR | 363-380 | 7.059 |
| NtrC | 24-40 | 7.007 |
| Mlc | 43-65 | 6.411 |
| TrpR | 163-180 | 6.163 |
| FadR | 203-219 | 5.612 |
| NarP | 180-186 | 5.342 |