| TF name | Position | PWM scan score |
| ArcA | 159-219 | 34.219 |
| DcuR | 166-220 | 23.265 |
| NagC | 26-48 | 22.524 |
| CysB | 109-150 | 22.374 |
| CytR | 162-201 | 20.497 |
| Rob | 216-236 | 20.311 |
| FNR | 120-141 | 19.889 |
| CRP | 117-138 | 19.379 |
| GcvA | 19-47 | 17.428 |
| OxyR | 211-255 | 16.611 |
| AgaR | 117-140 | 16.602 |
| Fur | 213-227 | 16.313 |
| Mlc | 25-47 | 16.084 |
| Fis | 336-356 | 15.802 |
| GntR | 132-151 | 15.751 |
| H-NS | 159-173 | 15.697 |
| OmpR | 336-355 | 15.621 |
| ModE | 246-272 | 15.539 |
| GadE | 104-123 | 14.353 |
| XylR | 1-18 | 14.111 |
| AraC | 213-230 | 13.917 |
| Nac | 24-38 | 13.834 |
| IHF | 246-258 | 13.823 |
| RcsB | 246-259 | 13.421 |
| ArgP | 220-232 | 13.178 |
| CaiF | 197-241 | 12.975 |
| MetR | 103-126 | 12.518 |
| UlaR | 253-272 | 12.463 |
| PhoP | 233-249 | 12.314 |
| PhoB | 252-271 | 12.250 |
| Lrp | 111-122 | 11.737 |
| TorR | 338-347 | 11.647 |
| UxuR | 185-202 | 11.089 |
| MarA | 133-153 | 11.071 |
| MelR | 51-68 | 10.839 |
| IdnR | 246-261 | 10.748 |
| SoxS | 120-137 | 10.495 |
| ArgR | 113-128 | 10.397 |
| GlpR | 119-138 | 10.391 |
| NarL | 381-387 | 10.377 |
| CpxR | 20-34 | 10.241 |
| TyrR | 246-267 | 10.020 |
| NorR | 277-293 | 9.859 |
| Ada | 260-287 | 9.538 |
| DnaA | 224-232 | 9.357 |
| FhlA | 29-68 | 8.765 |
| PspF | 209-225 | 8.560 |
| MetJ | 258-265 | 8.430 |
| DeoR | 234-249 | 7.902 |
| LacI | 180-200 | 7.889 |
| FadR | 178-194 | 7.662 |
| GalS | 136-151 | 6.821 |
| GalR | 136-151 | 6.821 |
| RhaS | 99-115 | 6.409 |
| FruR | 335-352 | 6.288 |
| MalT | 99-108 | 6.166 |
| NtrC | 111-127 | 6.005 |
| NarP | 347-353 | 5.708 |