| TF name | Position | PWM scan score |
| ArcA | 314-374 | 31.964 |
| OxyR | 312-356 | 26.526 |
| AgaR | 323-346 | 24.060 |
| CysB | 324-365 | 21.791 |
| NagC | 12-34 | 19.388 |
| GcvA | 355-383 | 18.548 |
| CytR | 216-255 | 17.702 |
| OmpR | 350-369 | 16.945 |
| MetR | 89-112 | 16.328 |
| SoxS | 359-376 | 15.832 |
| UlaR | 68-87 | 15.072 |
| H-NS | 350-364 | 14.806 |
| FNR | 335-356 | 14.653 |
| Fis | 199-219 | 14.339 |
| DcuR | 192-246 | 13.461 |
| Rob | 127-147 | 13.443 |
| PhoB | 141-160 | 13.268 |
| Mlc | 83-105 | 13.160 |
| Nac | 89-103 | 13.142 |
| PhoP | 211-227 | 13.067 |
| FhlA | 334-373 | 13.046 |
| ArgR | 365-380 | 12.760 |
| FruR | 125-142 | 12.432 |
| Lrp | 239-250 | 12.428 |
| Fur | 16-30 | 12.324 |
| ModE | 341-367 | 12.217 |
| IHF | 21-33 | 11.892 |
| CpxR | 96-110 | 11.511 |
| GadE | 340-359 | 11.339 |
| UxuR | 100-117 | 11.334 |
| GlpR | 343-362 | 10.945 |
| MarA | 260-280 | 10.927 |
| Ada | 224-251 | 10.901 |
| PspF | 56-72 | 10.880 |
| RcsB | 345-358 | 10.820 |
| CRP | 343-364 | 10.590 |
| TyrR | 235-256 | 10.467 |
| IdnR | 135-150 | 10.214 |
| NorR | 355-371 | 10.148 |
| NarL | 188-194 | 9.994 |
| ArgP | 205-217 | 9.696 |
| XylR | 41-58 | 9.246 |
| GntR | 6-25 | 9.243 |
| MetJ | 125-132 | 9.177 |
| AraC | 354-371 | 8.824 |
| DeoR | 86-101 | 8.738 |
| GalS | 137-152 | 7.614 |
| GalR | 137-152 | 7.614 |
| LexA | 58-77 | 7.112 |
| RhaS | 145-161 | 6.933 |
| TorR | 51-60 | 6.292 |
| DnaA | 274-282 | 6.252 |
| NarP | 79-85 | 6.176 |
| PurR | 74-89 | 6.063 |
| MalT | 373-382 | 6.041 |
| FadR | 98-114 | 6.018 |
| LacI | 129-149 | 5.921 |
| MelR | 266-283 | 5.714 |
| NtrC | 347-363 | 5.069 |