| TF name | Position | PWM scan score |
| ArcA | 128-188 | 47.619 |
| DcuR | 114-168 | 24.555 |
| CytR | 122-161 | 24.118 |
| GadE | 171-190 | 22.362 |
| CysB | 146-187 | 21.687 |
| Fur | 149-163 | 20.974 |
| OxyR | 144-188 | 20.877 |
| FNR | 149-170 | 18.707 |
| UxuR | 159-176 | 18.133 |
| OmpR | 165-184 | 17.316 |
| NagC | 146-168 | 17.284 |
| Mlc | 308-330 | 16.740 |
| UlaR | 131-150 | 16.676 |
| PhoB | 26-45 | 16.536 |
| GlpR | 308-327 | 16.216 |
| PhoP | 13-29 | 16.133 |
| ArgR | 322-337 | 16.017 |
| AgaR | 157-180 | 15.698 |
| RcsB | 208-221 | 15.561 |
| CRP | 146-167 | 14.911 |
| GntR | 168-187 | 14.868 |
| Fis | 170-190 | 14.654 |
| IHF | 184-196 | 14.183 |
| GcvA | 321-349 | 14.059 |
| TyrR | 123-144 | 13.858 |
| Nac | 106-120 | 13.737 |
| H-NS | 171-185 | 13.480 |
| SoxS | 224-241 | 13.001 |
| Rob | 322-342 | 12.985 |
| Lrp | 152-163 | 12.595 |
| DeoR | 256-271 | 12.360 |
| ModE | 128-154 | 12.276 |
| XylR | 99-116 | 12.262 |
| ArgP | 265-277 | 11.762 |
| IdnR | 100-115 | 11.292 |
| CpxR | 89-103 | 11.229 |
| Ada | 90-117 | 10.935 |
| PspF | 158-174 | 10.873 |
| TorR | 132-141 | 10.723 |
| MetR | 109-132 | 10.622 |
| NarL | 160-166 | 10.377 |
| MelR | 267-284 | 9.932 |
| DnaA | 175-183 | 8.866 |
| LacI | 93-113 | 8.809 |
| AraC | 188-205 | 8.041 |
| PurR | 204-219 | 7.901 |
| MarA | 203-223 | 7.554 |
| FhlA | 89-128 | 7.529 |
| NorR | 204-220 | 7.371 |
| MetJ | 341-348 | 7.171 |
| NarP | 247-253 | 6.794 |
| FruR | 326-343 | 6.600 |
| FadR | 327-343 | 6.360 |
| RhaS | 288-304 | 6.160 |
| LexA | 89-108 | 6.127 |
| NtrC | 33-49 | 5.654 |
| GalR | 34-49 | 5.244 |
| GalS | 34-49 | 5.244 |