| TF name | Position | PWM scan score |
| ArcA | 108-168 | 27.183 |
| CysB | 128-169 | 26.454 |
| GadE | 8-27 | 20.719 |
| TyrR | 128-149 | 19.005 |
| FNR | 205-226 | 16.566 |
| CpxR | 130-144 | 16.412 |
| PhoP | 318-334 | 15.971 |
| CytR | 132-171 | 15.769 |
| NagC | 367-389 | 15.750 |
| OmpR | 124-143 | 15.485 |
| SoxS | 118-135 | 15.248 |
| MetR | 134-157 | 15.118 |
| IHF | 116-128 | 15.111 |
| RcsB | 342-355 | 15.086 |
| DcuR | 256-310 | 14.734 |
| H-NS | 256-270 | 14.406 |
| GcvA | 240-268 | 14.195 |
| ArgR | 379-394 | 13.989 |
| CRP | 121-142 | 13.826 |
| OxyR | 232-276 | 13.422 |
| Fis | 317-337 | 13.140 |
| Lrp | 121-132 | 12.955 |
| ModE | 127-153 | 12.752 |
| AgaR | 21-44 | 12.632 |
| PhoB | 145-164 | 12.386 |
| ArgP | 186-198 | 11.939 |
| PspF | 124-140 | 11.753 |
| TorR | 338-347 | 11.180 |
| Rob | 122-142 | 11.077 |
| Nac | 120-134 | 11.063 |
| GlpR | 190-209 | 11.032 |
| Fur | 240-254 | 10.912 |
| GntR | 133-152 | 10.887 |
| DnaA | 126-134 | 10.846 |
| Mlc | 168-190 | 10.793 |
| MarA | 154-174 | 10.763 |
| DeoR | 104-119 | 10.712 |
| NarP | 142-148 | 10.626 |
| UlaR | 331-350 | 10.501 |
| NarL | 206-212 | 10.377 |
| NorR | 126-142 | 9.943 |
| UxuR | 82-99 | 9.823 |
| FadR | 194-210 | 9.701 |
| TrpR | 270-287 | 9.592 |
| MetJ | 43-50 | 9.589 |
| IdnR | 117-132 | 9.143 |
| CaiF | 299-343 | 9.014 |
| FruR | 26-43 | 7.967 |
| AraC | 116-133 | 7.936 |
| XylR | 126-143 | 7.752 |
| Ada | 107-134 | 7.010 |
| NtrC | 296-312 | 6.679 |
| LacI | 280-300 | 6.566 |
| MelR | 307-324 | 6.189 |
| GalR | 95-110 | 5.586 |
| GalS | 95-110 | 5.586 |