| TF name | Position | PWM scan score |
| ArcA | 87-147 | 38.885 |
| OxyR | 118-162 | 24.876 |
| DcuR | 115-169 | 24.031 |
| Mlc | 137-159 | 21.440 |
| CysB | 188-229 | 21.241 |
| NagC | 111-133 | 20.377 |
| PhoP | 139-155 | 19.996 |
| AgaR | 133-156 | 19.798 |
| CytR | 80-119 | 19.269 |
| FNR | 108-129 | 19.005 |
| Rob | 77-97 | 18.630 |
| H-NS | 143-157 | 18.218 |
| Nac | 109-123 | 17.614 |
| OmpR | 362-381 | 17.404 |
| Fis | 103-123 | 17.035 |
| MetR | 68-91 | 16.846 |
| GcvA | 99-127 | 16.258 |
| XylR | 24-41 | 15.564 |
| PspF | 90-106 | 15.557 |
| IHF | 117-129 | 15.028 |
| GadE | 165-184 | 14.243 |
| Fur | 73-87 | 14.159 |
| UlaR | 124-143 | 13.731 |
| ArgR | 137-152 | 13.515 |
| Lrp | 76-87 | 13.285 |
| SoxS | 139-156 | 13.196 |
| ModE | 117-143 | 13.148 |
| CpxR | 173-187 | 13.104 |
| AraC | 145-162 | 12.900 |
| PhoB | 71-90 | 12.864 |
| CRP | 136-157 | 12.745 |
| Ada | 90-117 | 12.741 |
| TorR | 137-146 | 12.512 |
| TyrR | 115-136 | 11.951 |
| UxuR | 248-265 | 11.881 |
| ArgP | 78-90 | 11.751 |
| MarA | 162-182 | 11.042 |
| NarL | 54-60 | 10.241 |
| FruR | 114-131 | 10.047 |
| GlpR | 41-60 | 9.883 |
| DnaA | 331-339 | 9.464 |
| IdnR | 151-166 | 9.143 |
| RcsB | 151-164 | 9.029 |
| FadR | 193-209 | 8.895 |
| DeoR | 171-186 | 8.497 |
| NorR | 298-314 | 7.623 |
| NarP | 221-227 | 7.347 |
| GntR | 25-44 | 7.234 |
| FhlA | 323-362 | 6.148 |
| MelR | 175-192 | 5.934 |
| MetJ | 114-121 | 5.609 |
| MalT | 17-26 | 5.479 |
| TrpR | 165-182 | 5.317 |
| LacI | 157-177 | 5.072 |
| RhaS | 333-349 | 5.070 |