| TF name | Position | PWM scan score |
| ArcA | 264-324 | 27.352 |
| Mlc | 186-208 | 19.381 |
| Ada | 166-193 | 19.174 |
| CysB | 280-321 | 18.991 |
| FNR | 169-190 | 17.820 |
| Fur | 118-132 | 17.631 |
| RcsB | 125-138 | 17.604 |
| OxyR | 198-242 | 17.602 |
| CRP | 187-208 | 17.458 |
| FhlA | 133-172 | 17.033 |
| Nac | 171-185 | 16.219 |
| DcuR | 236-290 | 16.124 |
| AraC | 173-190 | 15.975 |
| UlaR | 175-194 | 15.877 |
| NagC | 316-338 | 15.523 |
| DeoR | 78-93 | 15.177 |
| AgaR | 182-205 | 15.091 |
| CytR | 353-392 | 14.616 |
| GcvA | 276-304 | 14.548 |
| ModE | 356-382 | 14.510 |
| OmpR | 280-299 | 14.353 |
| IHF | 359-371 | 14.242 |
| H-NS | 236-250 | 14.191 |
| GadE | 151-170 | 14.007 |
| Fis | 230-250 | 13.543 |
| PhoP | 180-196 | 13.265 |
| ArgR | 175-190 | 12.839 |
| Rob | 236-256 | 12.669 |
| MelR | 159-176 | 12.173 |
| GntR | 371-390 | 12.156 |
| GlpR | 36-55 | 12.003 |
| PhoB | 86-105 | 11.838 |
| SoxS | 232-249 | 11.826 |
| MarA | 22-42 | 11.179 |
| DnaA | 171-179 | 10.924 |
| CpxR | 368-382 | 10.859 |
| NorR | 126-142 | 10.648 |
| ArgP | 240-252 | 10.526 |
| Lrp | 196-207 | 10.234 |
| LexA | 134-153 | 10.013 |
| MetR | 170-193 | 9.974 |
| FruR | 306-323 | 9.857 |
| TorR | 100-109 | 9.829 |
| UxuR | 90-107 | 9.823 |
| PspF | 118-134 | 9.819 |
| TyrR | 289-310 | 9.641 |
| MetJ | 134-141 | 9.177 |
| IdnR | 117-132 | 8.955 |
| NarL | 293-299 | 8.932 |
| GalR | 93-108 | 8.925 |
| GalS | 93-108 | 8.925 |
| FadR | 40-56 | 8.514 |
| XylR | 365-382 | 8.305 |
| NarP | 97-103 | 7.740 |
| LacI | 84-104 | 5.589 |
| PurR | 93-108 | 5.357 |