| TF name | Position | PWM scan score |
| ArcA | 181-241 | 33.381 |
| DcuR | 93-147 | 31.357 |
| CysB | 208-249 | 25.383 |
| Mlc | 209-231 | 23.576 |
| GadE | 357-376 | 21.885 |
| AgaR | 218-241 | 20.591 |
| OmpR | 356-375 | 20.199 |
| CytR | 189-228 | 19.639 |
| NagC | 211-233 | 18.660 |
| OxyR | 116-160 | 18.584 |
| FNR | 204-225 | 18.125 |
| H-NS | 370-384 | 17.535 |
| RcsB | 223-236 | 17.484 |
| ArgR | 22-37 | 16.812 |
| XylR | 352-369 | 16.375 |
| PhoB | 99-118 | 16.330 |
| Fur | 198-212 | 15.818 |
| Fis | 360-380 | 15.760 |
| CRP | 211-232 | 15.396 |
| GcvA | 46-74 | 14.999 |
| UlaR | 210-229 | 14.791 |
| ModE | 75-101 | 14.445 |
| AraC | 374-391 | 14.396 |
| IHF | 204-216 | 14.360 |
| ArgP | 311-323 | 14.338 |
| Nac | 224-238 | 13.935 |
| Ada | 202-229 | 13.433 |
| GntR | 255-274 | 13.333 |
| TyrR | 201-222 | 13.317 |
| PspF | 103-119 | 13.116 |
| SoxS | 133-150 | 13.085 |
| PhoP | 93-109 | 12.831 |
| Lrp | 201-212 | 12.118 |
| MarA | 134-154 | 11.831 |
| Rob | 137-157 | 11.678 |
| GlpR | 160-179 | 11.580 |
| IdnR | 210-225 | 11.443 |
| MelR | 129-146 | 11.401 |
| DeoR | 145-160 | 11.355 |
| UxuR | 359-376 | 11.351 |
| CpxR | 206-220 | 11.098 |
| FruR | 341-358 | 10.700 |
| NorR | 212-228 | 9.782 |
| MetR | 200-223 | 9.765 |
| NarP | 264-270 | 9.746 |
| NarL | 206-212 | 9.580 |
| DnaA | 82-90 | 8.853 |
| RhaS | 84-100 | 8.598 |
| FadR | 322-338 | 7.456 |
| TorR | 210-219 | 7.442 |
| LacI | 218-238 | 7.164 |
| NtrC | 44-60 | 7.124 |
| LexA | 364-383 | 6.672 |
| CaiF | 185-229 | 6.672 |
| GalS | 186-201 | 6.436 |
| GalR | 186-201 | 6.436 |
| MetJ | 215-222 | 5.992 |
| FhlA | 257-296 | 5.517 |
| TrpR | 230-247 | 5.486 |