| TF name | Position | PWM scan score |
| ArcA | 12-72 | 30.286 |
| UlaR | 345-364 | 20.591 |
| CytR | 335-374 | 18.232 |
| Rob | 55-75 | 17.259 |
| CysB | 310-351 | 16.029 |
| ArgR | 379-394 | 15.890 |
| MelR | 215-232 | 15.588 |
| NagC | 336-358 | 15.525 |
| NorR | 336-352 | 14.939 |
| PhoB | 97-116 | 14.926 |
| IHF | 382-394 | 14.642 |
| FNR | 337-358 | 14.461 |
| AgaR | 370-393 | 14.201 |
| H-NS | 92-106 | 13.172 |
| TorR | 314-323 | 13.033 |
| Ada | 20-47 | 12.795 |
| Nac | 335-349 | 12.756 |
| GlpR | 295-314 | 12.461 |
| SoxS | 88-105 | 12.170 |
| CRP | 94-115 | 12.120 |
| ArgP | 105-117 | 12.118 |
| GadE | 337-356 | 11.915 |
| PspF | 68-84 | 11.333 |
| OxyR | 29-73 | 11.286 |
| UxuR | 375-392 | 10.995 |
| ModE | 346-372 | 10.981 |
| IdnR | 288-303 | 10.731 |
| MarA | 86-106 | 10.594 |
| Fis | 339-359 | 10.537 |
| XylR | 83-100 | 10.485 |
| Lrp | 387-398 | 10.191 |
| CpxR | 344-358 | 9.832 |
| DcuR | 87-141 | 9.758 |
| AraC | 101-118 | 9.630 |
| OmpR | 38-57 | 9.480 |
| NtrC | 77-93 | 9.215 |
| NarL | 13-19 | 8.993 |
| MetR | 18-41 | 8.892 |
| FruR | 379-396 | 8.820 |
| RcsB | 346-359 | 8.639 |
| TyrR | 29-50 | 7.913 |
| FadR | 70-86 | 7.745 |
| GcvA | 289-317 | 7.716 |
| DeoR | 344-359 | 7.714 |
| PhoP | 343-359 | 7.709 |
| DnaA | 226-234 | 7.676 |
| Fur | 101-115 | 7.474 |
| MetJ | 12-19 | 7.462 |
| Mlc | 30-52 | 7.430 |
| NarP | 383-389 | 7.423 |
| GntR | 312-331 | 7.287 |
| FhlA | 337-376 | 6.148 |
| LacI | 370-390 | 6.096 |
| LexA | 351-370 | 5.739 |
| CueR | 144-162 | 5.348 |