| TF name | Position | PWM scan score |
| ArcA | 104-164 | 30.290 |
| CysB | 101-142 | 25.052 |
| NagC | 125-147 | 20.874 |
| FNR | 113-134 | 20.618 |
| OxyR | 105-149 | 18.980 |
| CytR | 347-386 | 18.582 |
| MetR | 129-152 | 17.187 |
| GcvA | 121-149 | 16.835 |
| Mlc | 310-332 | 16.740 |
| GlpR | 310-329 | 16.216 |
| OmpR | 329-348 | 16.038 |
| ArgR | 324-339 | 16.017 |
| GadE | 128-147 | 15.605 |
| Fur | 17-31 | 15.186 |
| AgaR | 308-331 | 14.786 |
| RcsB | 92-105 | 14.578 |
| Nac | 6-20 | 14.506 |
| UlaR | 119-138 | 13.886 |
| IHF | 122-134 | 13.628 |
| TyrR | 324-345 | 13.555 |
| NorR | 236-252 | 13.522 |
| CRP | 110-131 | 13.299 |
| Ada | 167-194 | 13.268 |
| Rob | 324-344 | 12.985 |
| PhoB | 24-43 | 12.933 |
| H-NS | 130-144 | 12.285 |
| DcuR | 134-188 | 11.840 |
| IdnR | 324-339 | 11.265 |
| GntR | 2-21 | 11.265 |
| ModE | 116-142 | 11.141 |
| PhoP | 89-105 | 10.929 |
| Fis | 252-272 | 10.585 |
| MarA | 368-388 | 10.581 |
| DeoR | 371-386 | 10.480 |
| PspF | 34-50 | 10.148 |
| TorR | 10-19 | 10.028 |
| SoxS | 370-387 | 9.903 |
| Lrp | 127-138 | 9.708 |
| CpxR | 264-278 | 9.628 |
| NarL | 333-339 | 9.333 |
| FhlA | 245-284 | 8.993 |
| XylR | 137-154 | 8.878 |
| LacI | 344-364 | 8.802 |
| DnaA | 244-252 | 8.703 |
| UxuR | 69-86 | 8.487 |
| AraC | 11-28 | 8.340 |
| PurR | 292-307 | 8.184 |
| MalT | 197-206 | 7.919 |
| NarP | 276-282 | 7.550 |
| FruR | 328-345 | 7.322 |
| ArgP | 372-384 | 7.284 |
| LexA | 354-373 | 7.240 |
| MetJ | 343-350 | 7.171 |
| MelR | 138-155 | 6.943 |
| GalS | 271-286 | 5.629 |
| GalR | 271-286 | 5.629 |
| RhaS | 61-77 | 5.521 |