| TF name | Position | PWM scan score |
| ArcA | 119-179 | 34.613 |
| CytR | 268-307 | 25.618 |
| CysB | 112-153 | 23.862 |
| Mlc | 76-98 | 23.384 |
| OmpR | 78-97 | 22.052 |
| OxyR | 257-301 | 21.641 |
| GadE | 140-159 | 18.195 |
| NagC | 83-105 | 17.919 |
| Fur | 185-199 | 17.490 |
| TrpR | 347-364 | 17.160 |
| H-NS | 91-105 | 16.547 |
| RcsB | 192-205 | 16.400 |
| ArgR | 249-264 | 16.148 |
| PhoB | 90-109 | 16.085 |
| AgaR | 100-123 | 15.814 |
| DeoR | 211-226 | 15.753 |
| DcuR | 62-116 | 15.503 |
| PhoP | 87-103 | 15.229 |
| FNR | 191-212 | 15.167 |
| UxuR | 299-316 | 14.198 |
| MelR | 289-306 | 14.187 |
| UlaR | 298-317 | 14.111 |
| GcvA | 365-393 | 14.088 |
| ModE | 204-230 | 14.048 |
| Ada | 121-148 | 14.017 |
| Fis | 83-103 | 13.830 |
| TyrR | 82-103 | 13.483 |
| Nac | 138-152 | 13.361 |
| SoxS | 224-241 | 13.264 |
| XylR | 82-99 | 12.951 |
| IHF | 303-315 | 12.575 |
| CRP | 68-89 | 12.175 |
| GlpR | 220-239 | 11.287 |
| Rob | 295-315 | 11.209 |
| Lrp | 270-281 | 11.195 |
| AraC | 40-57 | 11.051 |
| TorR | 139-148 | 10.764 |
| ArgP | 298-310 | 10.512 |
| NarL | 196-202 | 10.377 |
| MarA | 241-261 | 10.310 |
| CpxR | 186-200 | 9.837 |
| FhlA | 201-240 | 9.825 |
| IdnR | 197-212 | 9.650 |
| NorR | 297-313 | 9.604 |
| LexA | 140-159 | 9.500 |
| MetR | 141-164 | 8.978 |
| NtrC | 307-323 | 8.956 |
| PspF | 171-187 | 8.543 |
| FruR | 153-170 | 8.194 |
| GntR | 202-221 | 7.697 |
| NarP | 121-127 | 7.347 |
| DnaA | 159-167 | 7.194 |
| PurR | 200-215 | 6.009 |
| MetJ | 188-195 | 5.882 |
| MalT | 15-24 | 5.875 |
| LacI | 191-211 | 5.505 |