| TF name | Position | PWM scan score |
| ArcA | 279-339 | 31.483 |
| CysB | 287-328 | 30.851 |
| DcuR | 273-327 | 17.064 |
| ModE | 79-105 | 16.428 |
| OmpR | 301-320 | 16.351 |
| Fis | 347-367 | 15.788 |
| UlaR | 334-353 | 15.686 |
| AgaR | 280-303 | 15.456 |
| OxyR | 107-151 | 15.281 |
| NagC | 43-65 | 15.234 |
| IHF | 314-326 | 14.995 |
| CRP | 212-233 | 14.742 |
| CytR | 328-367 | 14.624 |
| PhoP | 348-364 | 14.476 |
| CaiF | 295-339 | 13.318 |
| FNR | 215-236 | 13.294 |
| DeoR | 307-322 | 12.627 |
| GadE | 317-336 | 12.608 |
| Ada | 285-312 | 12.368 |
| CpxR | 297-311 | 12.368 |
| RcsB | 88-101 | 12.316 |
| NorR | 93-109 | 12.273 |
| H-NS | 318-332 | 12.148 |
| MelR | 212-229 | 12.076 |
| GalR | 139-154 | 11.955 |
| GalS | 139-154 | 11.955 |
| Nac | 346-360 | 11.811 |
| PhoB | 328-347 | 11.697 |
| GcvA | 340-368 | 11.182 |
| SoxS | 341-358 | 11.112 |
| ArgP | 330-342 | 10.743 |
| Fur | 332-346 | 10.584 |
| MetR | 80-103 | 10.516 |
| MarA | 238-258 | 10.240 |
| Lrp | 342-353 | 10.186 |
| Rob | 306-326 | 10.105 |
| ArgR | 253-268 | 9.717 |
| UxuR | 271-288 | 9.662 |
| TyrR | 47-68 | 9.569 |
| FruR | 323-340 | 9.380 |
| Mlc | 54-76 | 9.313 |
| GlpR | 313-332 | 9.091 |
| FadR | 361-377 | 9.026 |
| NarL | 356-362 | 8.993 |
| NarP | 94-100 | 8.977 |
| RhaS | 100-116 | 8.939 |
| CueR | 147-165 | 8.736 |
| LacI | 321-341 | 8.010 |
| MetJ | 235-242 | 7.986 |
| AraC | 88-105 | 7.814 |
| PspF | 179-195 | 7.660 |
| XylR | 60-77 | 7.433 |
| GntR | 94-113 | 7.216 |
| TorR | 25-34 | 6.773 |
| PurR | 139-154 | 6.578 |
| IdnR | 333-348 | 6.363 |
| DnaA | 28-36 | 5.994 |