| TF name | Position | PWM scan score |
| ArcA | 313-373 | 32.304 |
| CysB | 68-109 | 30.851 |
| CytR | 317-356 | 28.656 |
| DcuR | 330-384 | 21.053 |
| Fur | 201-215 | 20.964 |
| OmpR | 318-337 | 19.877 |
| CRP | 248-269 | 18.601 |
| OxyR | 321-365 | 17.995 |
| FNR | 319-340 | 16.630 |
| GcvA | 175-203 | 16.151 |
| H-NS | 319-333 | 15.796 |
| Fis | 128-148 | 15.788 |
| NagC | 319-341 | 15.737 |
| UlaR | 115-134 | 15.686 |
| AgaR | 61-84 | 15.456 |
| IHF | 95-107 | 14.995 |
| PhoB | 331-350 | 14.835 |
| PhoP | 129-145 | 14.476 |
| Rob | 304-324 | 14.467 |
| GadE | 347-366 | 14.458 |
| ModE | 335-361 | 13.731 |
| DnaA | 346-354 | 13.567 |
| NorR | 338-354 | 13.542 |
| TyrR | 300-321 | 13.409 |
| CaiF | 76-120 | 13.318 |
| DeoR | 88-103 | 12.627 |
| ArgR | 172-187 | 12.533 |
| LexA | 338-357 | 12.377 |
| CpxR | 78-92 | 12.368 |
| Ada | 66-93 | 12.368 |
| RcsB | 201-214 | 12.113 |
| TorR | 351-360 | 11.843 |
| Nac | 127-141 | 11.811 |
| AraC | 352-369 | 11.539 |
| SoxS | 122-139 | 11.112 |
| Mlc | 344-366 | 10.866 |
| ArgP | 111-123 | 10.743 |
| GlpR | 250-269 | 10.741 |
| MarA | 165-185 | 10.413 |
| Lrp | 123-134 | 10.186 |
| UxuR | 52-69 | 9.662 |
| FruR | 104-121 | 9.380 |
| NarL | 331-337 | 9.240 |
| FadR | 142-158 | 9.026 |
| IdnR | 313-328 | 8.767 |
| XylR | 372-389 | 8.693 |
| PspF | 360-376 | 8.553 |
| MelR | 370-387 | 8.436 |
| LacI | 102-122 | 8.010 |
| MetJ | 16-23 | 7.986 |
| MetR | 212-235 | 7.679 |
| FhlA | 253-292 | 7.588 |
| MalT | 226-235 | 6.822 |
| GntR | 317-336 | 6.381 |
| RhaS | 249-265 | 6.212 |
| PurR | 338-353 | 5.849 |
| NarP | 201-207 | 5.708 |
| GalR | 175-190 | 5.346 |
| GalS | 175-190 | 5.346 |