| TF name | Position | PWM scan score |
| ArcA | 322-382 | 36.115 |
| CysB | 92-133 | 26.913 |
| DcuR | 258-312 | 26.851 |
| NagC | 305-327 | 22.875 |
| OmpR | 329-348 | 22.422 |
| GadE | 333-352 | 22.408 |
| CytR | 252-291 | 20.435 |
| PhoP | 328-344 | 19.781 |
| OxyR | 93-137 | 19.109 |
| FNR | 374-395 | 18.819 |
| Nac | 274-288 | 17.964 |
| AgaR | 91-114 | 17.794 |
| H-NS | 118-132 | 17.188 |
| Fis | 308-328 | 17.122 |
| PhoB | 319-338 | 17.099 |
| CRP | 270-291 | 16.920 |
| CpxR | 371-385 | 16.750 |
| TyrR | 135-156 | 16.560 |
| FhlA | 302-341 | 16.487 |
| IHF | 326-338 | 15.679 |
| Rob | 329-349 | 15.442 |
| IdnR | 359-374 | 14.656 |
| MetR | 333-356 | 14.629 |
| ArgP | 166-178 | 14.515 |
| GntR | 329-348 | 14.321 |
| DeoR | 80-95 | 13.844 |
| MelR | 343-360 | 13.808 |
| Mlc | 255-277 | 13.694 |
| GcvA | 101-129 | 13.373 |
| MarA | 143-163 | 12.941 |
| SoxS | 94-111 | 12.832 |
| LacI | 346-366 | 12.697 |
| TorR | 248-257 | 12.471 |
| XylR | 137-154 | 12.383 |
| UlaR | 95-114 | 12.323 |
| PspF | 362-378 | 12.112 |
| FruR | 156-173 | 11.970 |
| GlpR | 248-267 | 11.716 |
| Ada | 302-329 | 11.660 |
| Lrp | 281-292 | 11.487 |
| ArgR | 280-295 | 11.289 |
| ModE | 262-288 | 10.667 |
| NorR | 72-88 | 10.648 |
| RcsB | 324-337 | 10.535 |
| FadR | 147-163 | 10.457 |
| UxuR | 335-352 | 10.384 |
| GalS | 185-200 | 9.576 |
| GalR | 185-200 | 9.576 |
| NarP | 174-180 | 9.455 |
| MetJ | 139-146 | 9.447 |
| PurR | 191-206 | 9.333 |
| AraC | 358-375 | 9.278 |
| Fur | 168-182 | 8.853 |
| DnaA | 336-344 | 8.160 |
| NarL | 336-342 | 8.131 |
| MalT | 70-79 | 7.632 |
| TrpR | 201-218 | 6.824 |
| NtrC | 361-377 | 5.700 |