| TF name | Position | PWM scan score |
| ArcA | 1-61 | 30.116 |
| OxyR | 352-396 | 26.202 |
| CysB | 338-379 | 22.202 |
| CytR | 344-383 | 21.247 |
| OmpR | 353-372 | 19.142 |
| FNR | 27-48 | 18.819 |
| AgaR | 354-377 | 18.378 |
| GadE | 369-388 | 18.117 |
| CpxR | 24-38 | 16.750 |
| Mlc | 353-375 | 16.584 |
| H-NS | 369-383 | 15.831 |
| NagC | 365-387 | 15.798 |
| Nac | 362-376 | 15.447 |
| CRP | 354-375 | 14.937 |
| DeoR | 332-347 | 14.902 |
| IdnR | 12-27 | 14.656 |
| ArgR | 106-121 | 14.039 |
| DcuR | 34-88 | 14.022 |
| IHF | 366-378 | 13.928 |
| Lrp | 360-371 | 13.655 |
| RcsB | 92-105 | 13.195 |
| GcvA | 358-386 | 13.005 |
| TyrR | 351-372 | 12.695 |
| UlaR | 354-373 | 12.623 |
| PhoB | 359-378 | 12.268 |
| Fis | 100-120 | 12.201 |
| PspF | 15-31 | 12.112 |
| XylR | 21-38 | 11.631 |
| LacI | 204-224 | 11.226 |
| SoxS | 13-30 | 11.067 |
| Rob | 361-381 | 11.051 |
| ArgP | 365-377 | 10.665 |
| Ada | 351-378 | 10.653 |
| PhoP | 34-50 | 10.569 |
| GntR | 268-287 | 9.968 |
| MarA | 56-76 | 9.918 |
| TorR | 94-103 | 9.592 |
| NarL | 368-374 | 9.580 |
| GlpR | 87-106 | 9.514 |
| NarP | 277-283 | 9.477 |
| MelR | 85-102 | 9.416 |
| AraC | 11-28 | 9.278 |
| UxuR | 19-36 | 8.826 |
| FhlA | 60-99 | 8.368 |
| FruR | 375-392 | 7.966 |
| MetJ | 201-208 | 7.733 |
| MetR | 5-28 | 7.534 |
| NorR | 356-372 | 7.096 |
| Fur | 6-20 | 6.580 |
| RhaS | 127-143 | 6.501 |
| DnaA | 368-376 | 6.339 |
| NtrC | 277-293 | 5.856 |
| TrpR | 360-377 | 5.587 |
| ModE | 12-38 | 5.404 |
| MalT | 27-36 | 5.303 |
| FadR | 266-282 | 5.272 |