| TF name | Position | PWM scan score |
| ArcA | 99-159 | 37.891 |
| OxyR | 82-126 | 26.202 |
| OmpR | 307-326 | 24.477 |
| CysB | 92-133 | 23.915 |
| CytR | 74-113 | 21.247 |
| FNR | 87-108 | 18.397 |
| AgaR | 84-107 | 18.378 |
| GadE | 99-118 | 18.117 |
| ArgR | 136-151 | 17.388 |
| PhoB | 141-160 | 17.130 |
| MarA | 358-378 | 16.858 |
| Mlc | 83-105 | 16.584 |
| TyrR | 302-323 | 16.425 |
| GcvA | 302-330 | 15.966 |
| H-NS | 99-113 | 15.831 |
| NagC | 95-117 | 15.798 |
| Nac | 92-106 | 15.447 |
| DeoR | 247-262 | 15.117 |
| MelR | 371-388 | 14.968 |
| CRP | 84-105 | 14.937 |
| CpxR | 146-160 | 14.931 |
| Fis | 144-164 | 14.058 |
| ModE | 259-285 | 13.968 |
| IHF | 96-108 | 13.928 |
| Lrp | 90-101 | 13.655 |
| IdnR | 70-85 | 13.078 |
| Rob | 128-148 | 12.899 |
| PhoP | 288-304 | 12.730 |
| UlaR | 84-103 | 12.623 |
| PspF | 140-156 | 12.495 |
| GlpR | 144-163 | 12.455 |
| Fur | 143-157 | 12.052 |
| DcuR | 83-137 | 11.840 |
| ArgP | 124-136 | 11.397 |
| LacI | 358-378 | 11.300 |
| MetR | 362-385 | 11.132 |
| Ada | 81-108 | 10.653 |
| RcsB | 88-101 | 10.248 |
| NarL | 98-104 | 9.580 |
| NarP | 7-13 | 9.477 |
| TorR | 246-255 | 9.392 |
| NorR | 224-240 | 9.137 |
| SoxS | 135-152 | 9.081 |
| DnaA | 128-136 | 8.951 |
| XylR | 90-107 | 8.858 |
| AraC | 136-153 | 8.762 |
| GntR | 307-326 | 8.528 |
| UxuR | 141-158 | 8.487 |
| FruR | 105-122 | 7.966 |
| RhaS | 253-269 | 7.292 |
| NtrC | 304-320 | 6.694 |
| PurR | 374-389 | 6.440 |
| MetJ | 256-263 | 5.648 |
| TrpR | 90-107 | 5.587 |
| FadR | 303-319 | 5.326 |
| GalS | 239-254 | 5.230 |
| GalR | 239-254 | 5.230 |
| MalT | 4-13 | 5.187 |