| TF name | Position | PWM scan score |
| ArcA | 179-239 | 30.230 |
| CysB | 204-245 | 22.637 |
| OmpR | 359-378 | 20.508 |
| DcuR | 86-140 | 20.465 |
| FNR | 17-38 | 18.959 |
| AgaR | 279-302 | 18.819 |
| NagC | 116-138 | 18.426 |
| Fur | 368-382 | 18.363 |
| Fis | 197-217 | 17.940 |
| PhoP | 222-238 | 17.031 |
| ModE | 348-374 | 16.482 |
| CpxR | 329-343 | 15.723 |
| IHF | 23-35 | 15.548 |
| OxyR | 326-370 | 15.438 |
| GadE | 33-52 | 15.068 |
| CytR | 19-58 | 14.730 |
| Rob | 359-379 | 14.570 |
| Mlc | 114-136 | 14.425 |
| Ada | 264-291 | 14.064 |
| PurR | 263-278 | 13.996 |
| GcvA | 365-393 | 13.706 |
| XylR | 367-384 | 13.686 |
| H-NS | 358-372 | 13.196 |
| Lrp | 17-28 | 13.133 |
| PspF | 280-296 | 13.089 |
| MarA | 362-382 | 12.785 |
| PhoB | 370-389 | 12.084 |
| UxuR | 19-36 | 11.512 |
| SoxS | 355-372 | 11.360 |
| IdnR | 354-369 | 11.265 |
| UlaR | 380-399 | 11.233 |
| CRP | 325-346 | 11.160 |
| ArgP | 346-358 | 10.729 |
| AraC | 273-290 | 10.673 |
| TyrR | 193-214 | 10.659 |
| LexA | 198-217 | 10.032 |
| RcsB | 195-208 | 9.777 |
| NarL | 202-208 | 9.580 |
| DeoR | 329-344 | 9.372 |
| GalS | 263-278 | 9.354 |
| GalR | 263-278 | 9.354 |
| Nac | 360-374 | 9.135 |
| NorR | 196-212 | 8.976 |
| FhlA | 320-359 | 8.849 |
| FruR | 233-250 | 8.648 |
| LacI | 130-150 | 8.527 |
| ArgR | 273-288 | 8.415 |
| GlpR | 22-41 | 8.363 |
| DnaA | 22-30 | 8.304 |
| MelR | 5-22 | 8.255 |
| GntR | 129-148 | 8.042 |
| MetR | 121-144 | 7.679 |
| TorR | 17-26 | 7.208 |
| MalT | 57-66 | 6.661 |
| MetJ | 197-204 | 6.375 |
| FadR | 367-383 | 6.302 |
| NarP | 292-298 | 6.176 |
| RhaS | 52-68 | 6.093 |