| TF name | Position | PWM scan score |
| ArcA | 49-109 | 30.230 |
| CysB | 74-115 | 22.637 |
| OmpR | 229-248 | 20.508 |
| FNR | 375-396 | 19.820 |
| AgaR | 149-172 | 18.819 |
| CytR | 240-279 | 18.589 |
| Fur | 238-252 | 18.363 |
| RcsB | 261-274 | 18.170 |
| Fis | 67-87 | 17.940 |
| PhoP | 92-108 | 17.031 |
| DcuR | 244-298 | 16.520 |
| ModE | 218-244 | 16.482 |
| CpxR | 199-213 | 15.723 |
| OxyR | 196-240 | 15.438 |
| Rob | 229-249 | 14.570 |
| DeoR | 348-363 | 14.202 |
| IHF | 381-393 | 14.068 |
| Ada | 134-161 | 14.064 |
| PurR | 133-148 | 13.996 |
| GcvA | 235-263 | 13.706 |
| XylR | 237-254 | 13.686 |
| Mlc | 196-218 | 13.666 |
| H-NS | 228-242 | 13.196 |
| PspF | 150-166 | 13.089 |
| GadE | 265-284 | 12.790 |
| MarA | 232-252 | 12.785 |
| PhoB | 240-259 | 12.084 |
| Lrp | 70-81 | 11.998 |
| SoxS | 225-242 | 11.360 |
| IdnR | 224-239 | 11.265 |
| UlaR | 250-269 | 11.233 |
| CRP | 195-216 | 11.160 |
| ArgP | 216-228 | 10.729 |
| AraC | 143-160 | 10.673 |
| TyrR | 63-84 | 10.659 |
| LexA | 68-87 | 10.032 |
| NarL | 72-78 | 9.580 |
| GlpR | 266-285 | 9.566 |
| MetR | 285-308 | 9.424 |
| GalR | 133-148 | 9.354 |
| GalS | 133-148 | 9.354 |
| Nac | 262-276 | 9.315 |
| DnaA | 331-339 | 9.060 |
| NorR | 66-82 | 8.976 |
| FhlA | 190-229 | 8.849 |
| NagC | 268-290 | 8.791 |
| UxuR | 231-248 | 8.675 |
| FruR | 103-120 | 8.648 |
| ArgR | 143-158 | 8.415 |
| LacI | 282-302 | 7.805 |
| MetJ | 67-74 | 6.375 |
| FadR | 237-253 | 6.302 |
| TorR | 196-205 | 6.185 |
| NarP | 162-168 | 6.176 |
| GntR | 216-235 | 5.556 |
| MalT | 363-372 | 5.524 |