| TF name | Position | PWM scan score |
| ArcA | 264-324 | 31.811 |
| CysB | 270-311 | 21.837 |
| OxyR | 246-290 | 20.298 |
| DcuR | 99-153 | 20.193 |
| FNR | 19-40 | 19.820 |
| GntR | 273-292 | 19.579 |
| AgaR | 268-291 | 18.492 |
| Fur | 281-295 | 17.953 |
| H-NS | 372-386 | 17.575 |
| OmpR | 374-393 | 17.411 |
| CRP | 275-296 | 17.350 |
| MarA | 368-388 | 17.230 |
| GcvA | 329-357 | 16.661 |
| RcsB | 116-129 | 16.626 |
| CytR | 134-173 | 16.497 |
| GadE | 229-248 | 16.175 |
| MelR | 119-136 | 15.610 |
| IHF | 287-299 | 15.237 |
| ArgP | 156-168 | 15.236 |
| Mlc | 303-325 | 15.027 |
| NagC | 315-337 | 14.955 |
| GalR | 334-349 | 14.836 |
| GalS | 334-349 | 14.836 |
| CpxR | 308-322 | 14.803 |
| Rob | 155-175 | 14.312 |
| MetR | 250-273 | 14.105 |
| PhoP | 292-308 | 13.335 |
| Fis | 25-45 | 12.858 |
| ArgR | 376-391 | 12.321 |
| Nac | 283-297 | 12.252 |
| Ada | 179-206 | 11.643 |
| SoxS | 168-185 | 11.409 |
| ModE | 327-353 | 11.277 |
| XylR | 223-240 | 11.266 |
| Lrp | 329-340 | 10.931 |
| PhoB | 95-114 | 10.803 |
| UlaR | 380-399 | 9.957 |
| TyrR | 332-353 | 9.913 |
| GlpR | 160-179 | 9.659 |
| TorR | 290-299 | 9.592 |
| MetJ | 231-238 | 9.382 |
| NarL | 292-298 | 9.376 |
| IdnR | 150-165 | 9.331 |
| UxuR | 302-319 | 9.118 |
| LacI | 106-126 | 9.081 |
| DeoR | 258-273 | 8.939 |
| PurR | 334-349 | 8.800 |
| FhlA | 310-349 | 8.545 |
| AraC | 101-118 | 7.912 |
| FruR | 133-150 | 7.470 |
| DnaA | 194-202 | 7.296 |
| NorR | 280-296 | 7.257 |
| MalT | 185-194 | 7.226 |
| PspF | 161-177 | 7.210 |
| NarP | 310-316 | 6.781 |
| NtrC | 176-192 | 6.498 |
| FadR | 240-256 | 6.436 |